PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G25540.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 353aa    MW: 39110.5 Da    PI: 8.9505
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G25540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0016261283123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C  Cgk+  + s L  H+++H
  OBART03G25540.1 261 HECRLCGKVLASGSALGGHMKSH 283
                      78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.64835IPR007087Zinc finger, C2H2
SMARTSM0035510830IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.33E-6830No hitNo description
PROSITE patternPS0002801030IPR007087Zinc finger, C2H2
PfamPF139122.3E-61030IPR007087Zinc finger, C2H2
SuperFamilySSF576675.33E-685112No hitNo description
SMARTSM003553.490112IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.01490119IPR007087Zinc finger, C2H2
PfamPF139120.01690112IPR007087Zinc finger, C2H2
PROSITE patternPS00028092114IPR007087Zinc finger, C2H2
SMARTSM003550.14261283IPR015880Zinc finger, C2H2-like
PfamPF139124.8E-8261284IPR007087Zinc finger, C2H2
PROSITE profilePS501579.723261284IPR007087Zinc finger, C2H2
PROSITE patternPS000280263283IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MAQAEKQRWC KLCNKSFPSY CSLGGHMNLH STRRRKKKPP PSPRKAPPIT GASGSRYDFR  60
ERRRQRPVTP QSQPDHASSD DEPWTLAPKT ECQLCFKAFH SCDALSMHMK AHGHHGRKMV  120
MVEQRASRKT SSANFCGVDD GDHGFAAVSY AHCKRARSKR IRMDVFPAPV VVVTHGTEVE  180
DAACILVMLS KDAYKGSDSL DEDPQMDGSL ECGPQKTEME PSSYRLGVTG DTELIKPENS  240
SSYEEIKFGS LSNVLKATAI HECRLCGKVL ASGSALGGHM KSHSVPAHKK VATFPKTSVT  300
PSRKQLLEMQ NELHELNLPA LSNRDCSSTR TESELNPWWV ASSIQSERMM GVV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13338RRKKKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1096010.0AC109601.9 Oryza sativa chromosome 3 BAC OSJNBa0004G03 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629985.10.0uncharacterized protein LOC107280366
TrEMBLA0A0D3FL490.0A0A0D3FL49_9ORYZ; Uncharacterized protein
STRINGOBART03G25540.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143671921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.14e-09C2H2-like zinc finger protein