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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OBART03G22560.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
C2H2 |
Protein Properties |
Length: 200aa MW: 21336.1 Da PI: 8.8637 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OBART03G22560.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 15.4 | 5.4e-05 | 48 | 70 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C+ Cgk F+++ L H +H
OBART03G22560.1 48 FRCSVCGKAFPSHQALGGHKASH 70
89*************99998887 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006979 | Biological Process | response to oxidative stress |
GO:0009409 | Biological Process | response to cold |
GO:0009414 | Biological Process | response to water deprivation |
GO:0009611 | Biological Process | response to wounding |
GO:0009644 | Biological Process | response to high light intensity |
GO:0009651 | Biological Process | response to salt stress |
GO:0009737 | Biological Process | response to abscisic acid |
GO:0010117 | Biological Process | photoprotection |
GO:0010200 | Biological Process | response to chitin |
GO:0015979 | Biological Process | photosynthesis |
GO:0035264 | Biological Process | multicellular organism growth |
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
Protein Sequence Length: 200 aa
Download sequence Send
to blast |
MVTNMTHDDY VSLCLMALAQ AGVGGQWPAQ KQQIDMAPPA PERELLRFRC SVCGKAFPSH 60 QALGGHKASH RKPPTAALPM HVIDAPPPPS AEDTASSSTT TTTSGGGRHR CSVCHRTFAT 120 GQALGGHKRC HYWDGLSVVS VTASASGSGS SSVRNFDLNL KPVPDTVAAG VRRWGEEEEV 180 QSPLPFKKRR LSSPSLELNL
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in abscisic acid (ABA) signaling. Required for the regulation of the cross-talk between NADPH oxidase, hydrogen peroxide and MAP kinase in ABA signaling. Regulates the expression of the NADPH oxidase genes RBOHB and RBOHE, and the MAPK genes MPK1, MPK4, MPK5, MPK7 and MPK14. Regulates ABA-induced hydrogen peroxide production and antioxidant defense. Required for tolerance to water stress and oxidative stress. {ECO:0000269|PubMed:25071223}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by abscisic acid (ABA) and hydrogen peroxide. {ECO:0000269|PubMed:25071223}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC106887 | 0.0 | AC106887.3 Oryza sativa chromosome 3 BAC OSJNBa0054H04 genomic sequence, complete sequence. |
GenBank | AC147803 | 0.0 | AC147803.2 Oryza sativa chromosome 3 BAC OSJNBb0034P05 genomic sequence, complete sequence. |
GenBank | AK108997 | 0.0 | AK108997.1 Oryza sativa Japonica Group cDNA clone:002-153-G07, full insert sequence. |
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Yilmaz A, et al.
GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] - Zhang H, et al.
A novel rice C2H2-type zinc finger protein, ZFP36, is a key player involved in abscisic acid-induced antioxidant defence and oxidative stress tolerance in rice. J. Exp. Bot., 2014. 65(20): p. 5795-809 [PMID:25071223] - Li W, et al.
A Natural Allele of a Transcription Factor in Rice Confers Broad-Spectrum Blast Resistance. Cell, 2017. 170(1): p. 114-126.e15 [PMID:28666113]
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