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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
OBART03G16510.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family |
bZIP |
| Protein Properties |
Length: 216aa MW: 24049.2 Da PI: 9.5063 |
| Description |
bZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OBART03G16510.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | bZIP_1 | 31.3 | 4.5e-10 | 21 | 67 | 5 | 51 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51
kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l
OBART03G16510.1 21 KRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTL 67
9****************************************988865 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 216 aa
Download sequence Send
to blast |
MEAKKAMTPE QLSELAAIDP KRAKRILANR QSAARSKERK ARYITELERK VQTLQTEATT 60
LSAQLTLFQR DTTGLSAENA ELKIRLQAME QQAQLRDALN DALKQELERL KLATGEMTNS 120
NETYSMGLQH VPYNTPFFPL AQHNAARQNC GTQLPPQFQP PRPNVPNHML SHPNGLQDIM 180
QQDPLGRLQG LDISKGPLVV KSESSSISAS ESSSTF
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK059473 | 0.0 | AK059473.1 Oryza sativa Japonica Group cDNA clone:001-028-E05, full insert sequence. |
| GenBank | AK070466 | 0.0 | AK070466.1 Oryza sativa Japonica Group cDNA clone:J023052D02, full insert sequence. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Dai S,Zhang Z,Bick J,Beachy RN
Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus.
J. Gen. Virol., 2006. 87(Pt 3): p. 715-22
[PMID:16476995] - Liu Y,Dai S,Beachy RN
Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription.
Biochem. J., 2007. 405(2): p. 243-9
[PMID:17371296] - Dai S, et al.
Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease.
Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6
[PMID:19104064]
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