PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G14250.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 383aa    MW: 40771.5 Da    PI: 5.9556
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G14250.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.73e-06346372127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ykt +C+ fa+   C+yG rC+F H+p
  OBART03G14250.1 346 YKTLPCQMFAAASGCPYGHRCHFRHSP 372
                      9************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.4E-11339372IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.24E-7342371IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-4345372IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.746345373IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MEGELSFVSP ARSSCFSFDG GGSGSPTWVS TVEALLRSPT SSVSDGGGGG GGGYNSPASA  60
FPPEKLLISP PTCVSDNRGV GNGGGFPFLP WASSLERLLT SPSSCVSDSR GVGNADGFPS  120
LPWASSLEKP LTSPSSCVSD GRSGGYSSPL GASAEREREV REAEMLLRAI AERYDDCFLR  180
LRDAAAELSD LHRERLRLAA ENLHLSLLLE ELESEQRKQA SAMAPPKLEE DEAAQGGAPK  240
SISIRSPGYL SQKQPQGQAR PQRLRVRASQ AMEISHPNCL IFVMGNQCSP KEAAAAGDEE  300
DEEDKGGGEV EAGRGEDGAV QQVGARRVPL RRALPELRPV IRHPRYKTLP CQMFAAASGC  360
PYGHRCHFRH SPLRAAAAES FCY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1186680.0AC118668.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0036G02, from chromosome 3, complete sequence.
GenBankAC1372670.0AC137267.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G21, from chromosome 3, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880078.10.0putative zinc finger CCCH domain-containing protein 21
SwissprotQ10MN80.0C3H21_ORYSJ; Putative zinc finger CCCH domain-containing protein 21
TrEMBLA0A0D3FHG30.0A0A0D3FHG3_9ORYZ; Uncharacterized protein
STRINGOBART03G14250.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121433235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.24e-15C3H family protein