PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G12630.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 334aa    MW: 36266.2 Da    PI: 10.1764
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G12630.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.20.000341952331154
                      HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +R +++ +++  L++l+ +      +K + a++L +A  +I++L
  OBART03G12630.1 195 KRSQKLGDRITALQQLVSPY-----GKTDTASVLHEAAACIRQL 233
                      799999***********999.....9*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.048184233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-5195242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.3E-8195244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MLTDELERKR YRTLILMADT FLANDLRQFP SAKRKASLYT STLANIFILM LKVSSVAVKC  60
EASNSPSTTV GFDRMIAADY DLFHHMSFSP SLQNLQSPTF FTTRSSESYL GESSIYGGGA  120
RPALAQFSYS QPIAATSAAH LVRWTAAGEP MTGDGGFRSS KRLKTATTAT TQPPRHGVKC  180
HAKPRNQTTK ATCNKRSQKL GDRITALQQL VSPYGKTDTA SVLHEAAACI RQLHQQIQIL  240
TAPYPGTSSS SASSQQQVVF SVLESCSHVM SFFTAIATVL WLQDAGGGGG TATELRRRGL  300
CVAALSPAVV SLAAEGGRRR TDVEDQKRIW FSNQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0839421e-163AC083942.8 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0002D01, from chromosome 3, complete sequence.
GenBankAC1370691e-163AC137069.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0009C19, from chromosome 3, complete sequence.
GenBankAP0149591e-163AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-163CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630126.11e-159transcription factor bHLH110 isoform X1
RefseqXP_015630127.11e-159transcription factor bHLH110 isoform X1
TrEMBLA0A0D3FGX80.0A0A0D3FGX8_9ORYZ; Uncharacterized protein
STRINGOBART03G12630.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37582426
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.12e-16bHLH family protein