PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G11490.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 394aa    MW: 41877 Da    PI: 4.5979
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G11490.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS138.56.7e-431322881146
             GRAS   1 lvelLlecAeavss..gdlelaqalLarlselaspdgd......pmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfs 85 
                      l +lL+++Aea+s   ++ ela+ +L rl+e++s ++       +m+Rlaa+ft AL+  l +s +   +  ++ ++++++   ++l+a+++++
  OBART03G11490.1 132 LLHLLMAAAEALSGphKSRELARVILVRLKEMVSHTAGanaaasNMERLAAHFTDALQGLLDGSHPVGGSGRQAAAAASHHhAGDVLTAFQMLQ 225
                      579**********8557777************7766544566669******************888777766555554444499********** PP

             GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTg 146
                      ++sP++kf+h+taNqaIleav+g++rvHi+D+di +G+QW++L+qa++sR+   ++p+lRiT+
  OBART03G11490.1 226 DMSPYMKFGHFTANQAILEAVSGDRRVHIVDYDIAEGIQWASLMQAMTSRAdgVPAPHLRITA 288
                      ***************************************************666789*****8 PP
2GRAS40.93.2e-13289344318373
             GRAS 318 rleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaW 373
                      +++ +GF++vpls ++ +qa+lll  ++ dgy+vee   + +vlgWk r+L+s+S+W
  OBART03G11490.1 289 WMRGSGFTAVPLSCFNHSQARLLLGLFN-DGYTVEETgPNKIVLGWKARRLMSASVW 344
                      6999************************.******99457788************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098525.784106394IPR005202Transcription factor GRAS
PfamPF035142.3E-40132288IPR005202Transcription factor GRAS
PfamPF035141.1E-10289344IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MEVTMEDVAG DFEFSGCGST TTTSSASSLD DGTGMCYAWG ELSPVADWAN FCCSDDDGGH  60
DLHGLIESML CDDTLVGVDD DGQAGLHHAD MFRDDLYCYG NGSNPSSTTT TNPGSPVFDD  120
QTQGCPEKGL RLLHLLMAAA EALSGPHKSR ELARVILVRL KEMVSHTAGA NAAASNMERL  180
AAHFTDALQG LLDGSHPVGG SGRQAAAAAS HHHAGDVLTA FQMLQDMSPY MKFGHFTANQ  240
AILEAVSGDR RVHIVDYDIA EGIQWASLMQ AMTSRADGVP APHLRITAWM RGSGFTAVPL  300
SCFNHSQARL LLGLFNDGYT VEETGPNKIV LGWKARRLMS ASVWAPPPLP VPSSPPEGVC  360
QPVVGMAPVA TGGFARTEFD YIDSFLVEPA YALV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-2116228725145GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1352060.0AC135206.3 Oryza sativa Japonica Group chromosome 3 clone OJ1041F02, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630025.10.0nodulation-signaling pathway 2 protein
TrEMBLA0A0D3FGJ00.0A0A0D3FGJ0_9ORYZ; Uncharacterized protein
STRINGOBART03G11490.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75803148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.13e-41GRAS family protein