 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OBART03G11490.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
GRAS |
| Protein Properties |
Length: 394aa MW: 41877 Da PI: 4.5979 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OBART03G11490.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 138.5 | 6.7e-43 | 132 | 288 | 1 | 146 |
GRAS 1 lvelLlecAeavss..gdlelaqalLarlselaspdgd......pmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfs 85
l +lL+++Aea+s ++ ela+ +L rl+e++s ++ +m+Rlaa+ft AL+ l +s + + ++ ++++++ ++l+a+++++
OBART03G11490.1 132 LLHLLMAAAEALSGphKSRELARVILVRLKEMVSHTAGanaaasNMERLAAHFTDALQGLLDGSHPVGGSGRQAAAAASHHhAGDVLTAFQMLQ 225
579**********8557777************7766544566669******************888777766555554444499********** PP
GRAS 86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTg 146
++sP++kf+h+taNqaIleav+g++rvHi+D+di +G+QW++L+qa++sR+ ++p+lRiT+
OBART03G11490.1 226 DMSPYMKFGHFTANQAILEAVSGDRRVHIVDYDIAEGIQWASLMQAMTSRAdgVPAPHLRITA 288
***************************************************666789*****8 PP
|
| 2 | GRAS | 40.9 | 3.2e-13 | 289 | 344 | 318 | 373 |
GRAS 318 rleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaW 373
+++ +GF++vpls ++ +qa+lll ++ dgy+vee + +vlgWk r+L+s+S+W
OBART03G11490.1 289 WMRGSGFTAVPLSCFNHSQARLLLGLFN-DGYTVEETgPNKIVLGWKARRLMSASVW 344
6999************************.******99457788************** PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 394 aa
Download sequence Send
to blast |
MEVTMEDVAG DFEFSGCGST TTTSSASSLD DGTGMCYAWG ELSPVADWAN FCCSDDDGGH 60
DLHGLIESML CDDTLVGVDD DGQAGLHHAD MFRDDLYCYG NGSNPSSTTT TNPGSPVFDD 120
QTQGCPEKGL RLLHLLMAAA EALSGPHKSR ELARVILVRL KEMVSHTAGA NAAASNMERL 180
AAHFTDALQG LLDGSHPVGG SGRQAAAAAS HHHAGDVLTA FQMLQDMSPY MKFGHFTANQ 240
AILEAVSGDR RVHIVDYDIA EGIQWASLMQ AMTSRADGVP APHLRITAWM RGSGFTAVPL 300
SCFNHSQARL LLGLFNDGYT VEETGPNKIV LGWKARRLMS ASVWAPPPLP VPSSPPEGVC 360
QPVVGMAPVA TGGFARTEFD YIDSFLVEPA YALV
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC135206 | 0.0 | AC135206.3 Oryza sativa Japonica Group chromosome 3 clone OJ1041F02, complete sequence. |
| GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
