PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G11320.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 186aa    MW: 19981.3 Da    PI: 6.1594
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G11320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.94.1e-144389354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     r+h+e+ErrRR+riN  +++Lr+llP+      +K +Ka+ L ++++++k+L
  OBART03G11320.1 43 RSHSEAERRRRERINAHLARLRSLLPNT-----TKTDKASLLAEVIQHVKEL 89
                     78*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.1424089IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-1643111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.02E-54392No hitNo description
PfamPF000101.6E-114389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-1644110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-134695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MGHHGSHVAG MMMPPPFAPS PFGDLGRMTA QEIMDAKALA ASRSHSEAER RRRERINAHL  60
ARLRSLLPNT TKTDKASLLA EVIQHVKELK RQTSEITEEA CPLPTESDEL TVDASTGTDG  120
DGEQQEEAMQ APMSPQHTVA SIQDALRAVM ERTASATEES GGSGAGGGLK RQRTTSLSAI  180
LENRSI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14853ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1066491e-180AK106649.1 Oryza sativa Japonica Group cDNA clone:002-113-F07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797182.11e-76transcription factor bHLH30-like
TrEMBLA0A0D3FGG91e-131A0A0D3FGG9_9ORYZ; Uncharacterized protein
STRINGOBART03G11320.11e-132(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-24bHLH family protein