PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART03G09470.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 361aa MW: 39409.5 Da PI: 6.3149

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART03G09470.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.6	8.4e-12	188	236	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L++l+P + +k Ka++L + ++Y++sLq OBART03G09470.1 188 NSHSLAERFRREKINERMKLLQDLVPGC----NKITGKAMMLDEIINYVQSLQ 236 58************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	8.59E-12	183	240	No hit	No description
SuperFamily	SSF47459	1.31E-17	183	251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.8E-18	185	252	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.796	185	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.7E-9	188	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.3E-10	191	241	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MLLQQAFTLT VLFHCQSILT SFRHLLVPAA QQLKLQHQQK MVAIHWEAGG SSSGGLLMYS 60 PPCSAAASSQ GHCFAVGANQ LASLDLAMDF DEPILFPVHN ASLQEGIQFY NPTGDTQLSR 120 NMSIDKCLKG SKRKGSGEGS SSLHSQEETG EMPQRELSME HAGEKAGDAD ASREEYVHVR 180 AKRGQATNSH SLAERFRREK INERMKLLQD LVPGCNKITG KAMMLDEIIN YVQSLQRQVE 240 FLSMKLSTIS PELNSDLDLQ DILCSQDARS AFLGCSPQLS NAHPNLYRAA QQCLSPPGLY 300 GSVCVPNPAD VHLARAAHLA SFPQQRGLIW DEELRNIAPA GFASDAAGTS SLENSDSMKV 360 E

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MLLQQAFTLT VLFHCQSILT SFRHLLVPAA QQLKLQHQQK MVAIHWEAGG SSSGGLLMYS  60
PPCSAAASSQ GHCFAVGANQ LASLDLAMDF DEPILFPVHN ASLQEGIQFY NPTGDTQLSR  120
NMSIDKCLKG SKRKGSGEGS SSLHSQEETG EMPQRELSME HAGEKAGDAD ASREEYVHVR  180
AKRGQATNSH SLAERFRREK INERMKLLQD LVPGCNKITG KAMMLDEIIN YVQSLQRQVE  240
FLSMKLSTIS PELNSDLDLQ DILCSQDARS AFLGCSPQLS NAHPNLYRAA QQCLSPPGLY  300
GSVCVPNPAD VHLARAAHLA SFPQQRGLIW DEELRNIAPA GFASDAAGTS SLENSDSMKV  360
E

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK242003	0.0	AK242003.1 Oryza sativa Japonica Group cDNA, clone: J075103H14, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015631332.1	0.0	transcription factor bHLH137 isoform X1
Refseq	XP_015631334.1	0.0	transcription factor bHLH137 isoform X1
Refseq	XP_015631335.1	0.0	transcription factor bHLH137 isoform X1
Refseq	XP_025879613.1	0.0	transcription factor bHLH137 isoform X1
Refseq	XP_025879614.1	0.0	transcription factor bHLH137 isoform X1
TrEMBL	A0A0D3FFU3	0.0	A0A0D3FFU3_9ORYZ; Uncharacterized protein
STRING	OBART03G09470.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4536	29	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	2e-48	bHLH family protein