PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G07050.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 548aa    MW: 57089.5 Da    PI: 8.5509
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G07050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-055880123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C++C+k F r  nL+ H r H
  OBART03G07050.1 58 FVCEICNKGFQRDQNLQLHRRGH 80
                     89*******************88 PP
2zf-C2H213.20.00027134156123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC +C+k +  +s+ k H +t+
  OBART03G07050.1 134 WKCDKCSKKYAVQSDWKAHTKTC 156
                      58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-55780IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.38E-75780No hitNo description
PROSITE profilePS5015710.9495880IPR007087Zinc finger, C2H2
SMARTSM003550.0175880IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
SMARTSM0035519099129IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.2E-4122155IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.38E-7129154No hitNo description
SMARTSM00355140134154IPR015880Zinc finger, C2H2-like
PRINTSPR012171.0E-8211223No hitNo description
PRINTSPR012171.0E-8225241No hitNo description
PRINTSPR012171.0E-8253265No hitNo description
PRINTSPR012171.0E-8266287No hitNo description
PRINTSPR012171.0E-8342367No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MEVETSSGTA ERGAGAGAQQ QPPPQPPAKK KRALPGMPDP DAEVIALSPK TLLATNRFVC  60
EICNKGFQRD QNLQLHRRGH NLPWKLRQRS GKEVRKRVYV CPEPTCVHHD PSRALGDLTG  120
IKKHFCRKHG EKKWKCDKCS KKYAVQSDWK AHTKTCGSRE YRCDCGTLFS RRDSFITHRA  180
FCDALAEESA KARAAPPPPA DEDGTSASAG APPPQAPLPP PAPVPAPAPP PPPAAAPAPA  240
AQPEQRDRDA ALDQFATPAP APAPPPVTAP PPPPVAAPND CVSSSSSGVA PTSQSLLSSM  300
FAPPSVAQAP QYADPIGVGA GGHQERAVPA KPPALCLAPN ASSSLFTAPV PADRQQFAPP  360
PPPSPSPHMS ATALLQKAAQ MGATSSSSSF LRCLGLDMSS SSSAPPSSSG QQQQHHHHHH  420
QETMQVPLPA SSLPEWPPRL QPEPSPMLSS GLGLGLPYDA TGGPVSLPEL MMGQSTLFSA  480
KPATLDFLGL GVSPTGASTS RGFPTFIQPI GGAVSLAGSA TVAAETFGAA HGGQANPWER  540
NPSSSPIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-35130191364Zinc finger protein JACKDAW
5b3h_F1e-35130191364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1156870.0AC115687.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0091J11, from chromosome 3, complete sequence.
GenBankAC1164260.0AC116426.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0058P18, from chromosome 3, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632656.10.0protein indeterminate-domain 1
SwissprotQ9LVQ71e-137IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A0D3FF060.0A0A0D3FF06_9ORYZ; Uncharacterized protein
STRINGOBART03G07050.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.16e-95indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]