PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G06470.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 329aa    MW: 35218.7 Da    PI: 6.0615
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G06470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.82.7e-15109160155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+++N+ ++ Lr+l+P +   +s++ + a+i+  A++Y+k+L+
  OBART03G06470.1 109 QRMTHIAVERNRRRQMNEYLAVLRSLMPAS---YSQRGDQASIVGGAINYVKELE 160
                      79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.83E-15107164No hitNo description
PROSITE profilePS5088815.967108159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-17109174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-14109164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-12109160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-12114165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MALEAVVFPQ GHFGYGCGRD SPAYGMPWCD VLAAAGGGGG FGEFYGVDEW DDQLQVASVD  60
EWEVASKDNS DASTEGKAAA TERAAPVAAG RRKRRRTKVV KNKEEIECQR MTHIAVERNR  120
RRQMNEYLAV LRSLMPASYS QRGDQASIVG GAINYVKELE QLLQSLEVQK SLKNRSGAMD  180
AAGDSPFAGF FSFPQYSTSP RTGCSAAASA GSSGSASSVV MDDTAGSAES GRQAAAIADI  240
EVTMVEGHAS LKVLARRRPK QLLKLVVGLQ QLRIPPLHLN VTTVDAMVLY SFSLKVEDDS  300
KLGSVEDIAT AVHQILGSIQ QQEAVLSIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19195RKRRR
29196RKRRRT
3109120RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1075550.0AK107555.1 Oryza sativa Japonica Group cDNA clone:002-130-B03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629273.10.0transcription factor bHLH96
SwissprotQ9C7T41e-83BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0D3FET20.0A0A0D3FET2_9ORYZ; Uncharacterized protein
TrEMBLI1P8D00.0I1P8D0_ORYGL; Uncharacterized protein
STRINGORGLA03G0062600.10.0(Oryza glaberrima)
STRINGOBART03G06470.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.14e-59bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]