PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G04060.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family E2F/DP
Protein Properties Length: 373aa    MW: 40176.8 Da    PI: 6.2526
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G04060.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP85.34.5e-27122208371
          E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse.....................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      +++Lr++++k   ++ek+e+ g++t+neva+eLv+e                     d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  OBART03G04060.1 122 GRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpnnsilpadpdnpnaqqyDEKNIRRRVYDALNVLMAMEIISK-DKKEIQWKG 208
                      689*******...*****999************************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094046.1E-1261373IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.108.3E-45116213IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.5E-37120208IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467859.39E-20123209IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023196.9E-25123208IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd144584.10E-36213310IPR014889Transcription factor DP, C-terminal
SMARTSM011382.4E-72215371IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.7E-35215327No hitNo description
PfamPF087816.2E-35216344IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MVSGVAHRPD DDGGRAASTF QRPPQPAGAR PSLATPPPSG GAQSASTSGG SAGSPSSRSE  60
QHVPAAAGMA AGAAAASTPI SENTFLRLND LDIHGDDAPS SQAPTSKKKK RGARAVGPDK  120
GGRGLRQFSM KVCEKVESKG RTTYNEVADE LVAEFADPNN SILPADPDNP NAQQYDEKNI  180
RRRVYDALNV LMAMEIISKD KKEIQWKGLP RTSINDIEDL QTELVGLKSR IEKKNTYLQE  240
LQDQLIQRNE QLYGSGNIPS GGVALPFILV QTRPHATVEV EISEDMQLVH FDFNSTPFEL  300
HDDSFVLKAM SSCGEEQIDG IHDLISNGGE SSSMPNIYRQ QVQQPARSTN GTARLPSSPP  360
IPGILKGRVK HEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B5e-35114213193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2245890.0AY224589.1 Oryza sativa (japonica cultivar-group) isolate 31182 E2F dimerization factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628001.10.0transcription factor-like protein DPB isoform X1
SwissprotQ9FNY21e-130DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A0D3FDX70.0A0A0D3FDX7_9ORYZ; Uncharacterized protein
STRINGOBART03G04060.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-127Transcription factor DP