PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G03980.2
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 1450aa    MW: 158669 Da    PI: 5.8093
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G03980.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.7e-0513401365123
                       EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                       ++C    C+++F +k +L+ H+r+ +
  OBART03G03980.2 1340 FQCDieFCDMTFETKAELRAHQRNiC 1365
                       899999*****************877 PP
2zf-C2H212.60.0004213651387323
                       ET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                       C+   Cgk+Fs++ +LkrH+ +H
  OBART03G03980.2 1365 CTdeSCGKRFSSHKYLKRHQCVH 1387
                       77778***************998 PP
3zf-C2H213.70.0001914231449123
                       EEET..TTTEEESSHHHHHHHHHH..T CS
          zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                       ykC+  dCg+sF+  s++ rH ++  H
  OBART03G03980.2 1423 YKCSapDCGQSFRYVSDYSRHRKKfnH 1449
                       99********************98666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005459.1E-132970IPR003349JmjN domain
PROSITE profilePS5118313.6053071IPR003349JmjN domain
PfamPF023754.2E-133164IPR003349JmjN domain
SuperFamilySSF511971.73E-14213367No hitNo description
SMARTSM005581.2E-20230371IPR003347JmjC domain
PROSITE profilePS5118425.831233371IPR003347JmjC domain
PfamPF023735.3E-18263348IPR003347JmjC domain
Gene3DG3DSA:3.30.160.602.1E-413341362IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551213401362IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.53813401362IPR007087Zinc finger, C2H2
PROSITE profilePS5015713.00613631392IPR007087Zinc finger, C2H2
SMARTSM003552.313631387IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.38E-613651399No hitNo description
PROSITE patternPS00028013651387IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.8E-713691393IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.98E-1113871443No hitNo description
SMARTSM003556.6E-413931417IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.96713931422IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.8E-1113941417IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028013951417IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-1014181445IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.1414231449IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.36514231450IPR007087Zinc finger, C2H2
PROSITE patternPS00028014251449IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0045814Biological Processnegative regulation of gene expression, epigenetic
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0032452Molecular Functionhistone demethylase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1450 aa     Download sequence    Send to blast
MPPQPPPAAS ASASAPDPAV PAWLRGLPRA PEYRPTESEF ADPIAFLSRV EREAAAYGIC  60
KVIPPHPRPS RRFVFAHLNR SLVSSCDAPA PSPAAASDSS IPPSSSSSPP PASAAVFTTR  120
HQELGNPRRG RPTPQVLKQV WQSGERYTLD QFESKSRAFS KTHLAGLHEP TALAVESLFW  180
KASADRPIYI EYANDVPGSG FAAPVQLQRK KKQKRETAPM DEWEKSSGWR LSNSPWNLQA  240
IARAPGSLTR FMPDDVPGVT SPMVYIGMLF SWFAWHVEDH DLHSLNFLHT GAPKTWYAVP  300
GDRAVELEEV IRVHGYGGNT DRIASLAVLG EKTTLMSPEV LIDNGFNCGE AANFATPQWL  360
KFAKEAAVRR AVMNYLPMLS HQQLLNPREL LSGIRTSRLR DRKKEDRELL VKQEFLQDMI  420
SENELICSFL GKKSVDNVVL WEPDLLPSLT ALHPCSSCSK APEKKGEDGP RIGSTQSSSK  480
DDSSSDGTAC MTGTQSKGLS MDSKQAPEGE KLDTDDGDDL PFDLSIDSGS LTCVACGILG  540
YPFMAILQPS RKALEEISLV DKERYKLSCE KEICSNVLPC SPNDGSSGCP LIANRSSSPV  600
ENANLSHQDV KPIRSDISLM GKEFNGTLGK HIGTSCSCSS ENTIHPYGDT ETPEKKIPSD  660
CPGSELSKQS GRGDVNVPDV EGSEETISWN TGCAFARPRI FCLQHALEIE ELLASKGGVH  720
ALIICHADYV KLKALAISIA EEIEFQFDYK DVALANASKS NLHLINISID DEGYEEEGTD  780
WTSRMGLNLK HSSKIRKETS ESQEQPPLSF WGLFSKPSPI SVVSNLKWLC RKARTPYKVI  840
GYASSPDVVA TPDKVKPAVT KTQIDTSGNA HENIGSEQTL QQDCVLQESN DVADMCKRRK  900
VNDQDGHSLI NIPIAVAEYP MMHQVCERPV SVSACDDPIC SFDSQDSPTT VAVSAGKPTR  960
EQCGAESTEL STVQQFLDNG LIAEGGSMNF ISNHEHLESD NATSVCKDEQ LQVQQDQLAM  1020
VLCNNPNTEL VAGELHGGAA SSTLENEDSC GNTSYCSDTV LKNSKPDTDD QPETCDRSVV  1080
LVTPKSSCDQ MISSSDRSCS LTLDCPVSTD AAFSSEKLSM AHDLMGSELQ AVHNSKAEVA  1140
ASLTDVKGAK LNSIHTAQLP HESPSSDFII SEGAQSASAT AIPRKNGTSM HTESNSIDIL  1200
LGVLADESKV SSGKDEVGKA SLTLMTLAGN DQSADDVTQD EVAEITDPSH GFCASDIVSR  1260
SIGSSNRTNI ICYARRKHKR KSGSEFNINS PQSLGSFVRS PCESLRPRTR PAIVEDMTNE  1320
TKTAEASTAN KRKKAKVEAF QCDIEFCDMT FETKAELRAH QRNICTDESC GKRFSSHKYL  1380
KRHQCVHRDE RPFKCPWDGC PMTFKWLWAQ TEHIRVHTGE RPYKCSAPDC GQSFRYVSDY  1440
SRHRKKFNHY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A1e-53233918352Transcription factor jumonji (Jmj) family protein
6ip4_A1e-53233918352Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207214QRKKKQKR
2208215RKKKQKRE
312741280RRKHKRK
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3. Involved in the control of flowering time. Has a suppressive effect on floral transition under long day conditions through the demethylation of H3K4me3 in the promoter region of the flower-promoting signal HD3B/RFT1. {ECO:0000269|PubMed:24759811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630480.10.0lysine-specific demethylase SE14-like isoform X1
SwissprotQ10RP40.0SE14_ORYSJ; Lysine-specific demethylase SE14
TrEMBLA0A0D3FDW90.0A0A0D3FDW9_9ORYZ; Uncharacterized protein
STRINGOBART03G03980.10.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.11e-152C2H2 family protein