PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART03G02480.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 850aa MW: 94578.5 Da PI: 6.1951

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART03G02480.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.6	2.5e-28	528	578	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl+dl+k+F++++k+AAk+Lgvc+T+LKriCRq+GI+RWP+Rkik++ OBART03G02480.1 528 EKTVSLQDLRKHFAGSLKEAAKNLGVCPTTLKRICRQHGINRWPSRKIKKV 578 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.029	517	598	IPR003035	RWP-RK domain
Pfam	PF02042	6.1E-26	530	578	IPR003035	RWP-RK domain
Gene3D	G3DSA:3.10.20.240	9.8E-26	750	834	No hit	No description
SuperFamily	SSF54277	9.08E-23	750	834	No hit	No description
PROSITE profile	PS51745	23.255	752	835	IPR000270	PB1 domain
SMART	SM00666	2.0E-25	752	835	IPR000270	PB1 domain
Pfam	PF00564	1.0E-17	753	834	IPR000270	PB1 domain
CDD	cd06407	3.02E-43	753	834	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 850 aa Download sequence Send to blast
MEQKPSPPPP PRSDEEEDGL MGCGMGGTGN IAGGDLDLME EFLLATPGLD LSEFWHPGAA 60 SPFSPLFDIG SSGRGGDAQP WRRLDRRNQR LASYRTVSMK YQFSADESAR ADLGLPGRVF 120 VGRVPEWTPD VRYFSTEEYP RVQHAQYFDI RGSVALPVFE PRSRACLGVV ELVMTTQKVN 180 YSAEIENICN ALKEVDLRSS DVSSDPRSKV VDASYRAIIP EIMDVLRAVC DTHNLPLAQT 240 WIPCICQAKR GSRHSDESYK HCVSTVDEAC YVRDRSVLGF HQACSEHHLF RGEGVVGRAF 300 GTNEPCFSPD ITTYSKTQYP LSHHAKLFGL RAAVAIRLRS VKTGSLDFVL EFFLPMKCIN 360 TEEQRAMLNS LSNTIQQVCY TLRVVKPKEL VNDGPLEISQ PTRPEFYAKS VHENLDELCS 420 GINVPGRTTS LEASEEVSSW IASLVDAQNK GGKGEIDVDL PFGFSKQDDE GFSVTAGWHT 480 SPVMAPDGSM FSGFKCHEDY DVKENTCSSD PSNSNSDKAV EKRRTKTEKT VSLQDLRKHF 540 AGSLKEAAKN LGVCPTTLKR ICRQHGINRW PSRKIKKVGH SLKKLQMVID SVHGPEGTVQ 600 LSSLYENFTK TTWSERELQG DVHFPASEQN FQLEPSVPDR PCEGRFTSHT SGSNSISPSC 660 SQSSNSSLGC SSVPKTQQQH GSAPQLAVKE EISMDENQCS TLIKSASHAE AELQMFVEER 720 PTMLFRSQSQ VLLSEHKPIE NLSNMQKARS DSLKIKAIYG EERCIFRLQP SWGFQRLKEE 780 IVKRFGISQD THVDLKYLDD ESEWVLLTCD ADLLECIDVY KSSSNQTVRI LVNPSIQPLL 840 NASFGQTGLS

Sequence ? help Back to Top

Protein Sequence Length: 850 aa Download sequence Send to blast

MEQKPSPPPP PRSDEEEDGL MGCGMGGTGN IAGGDLDLME EFLLATPGLD LSEFWHPGAA  60
SPFSPLFDIG SSGRGGDAQP WRRLDRRNQR LASYRTVSMK YQFSADESAR ADLGLPGRVF  120
VGRVPEWTPD VRYFSTEEYP RVQHAQYFDI RGSVALPVFE PRSRACLGVV ELVMTTQKVN  180
YSAEIENICN ALKEVDLRSS DVSSDPRSKV VDASYRAIIP EIMDVLRAVC DTHNLPLAQT  240
WIPCICQAKR GSRHSDESYK HCVSTVDEAC YVRDRSVLGF HQACSEHHLF RGEGVVGRAF  300
GTNEPCFSPD ITTYSKTQYP LSHHAKLFGL RAAVAIRLRS VKTGSLDFVL EFFLPMKCIN  360
TEEQRAMLNS LSNTIQQVCY TLRVVKPKEL VNDGPLEISQ PTRPEFYAKS VHENLDELCS  420
GINVPGRTTS LEASEEVSSW IASLVDAQNK GGKGEIDVDL PFGFSKQDDE GFSVTAGWHT  480
SPVMAPDGSM FSGFKCHEDY DVKENTCSSD PSNSNSDKAV EKRRTKTEKT VSLQDLRKHF  540
AGSLKEAAKN LGVCPTTLKR ICRQHGINRW PSRKIKKVGH SLKKLQMVID SVHGPEGTVQ  600
LSSLYENFTK TTWSERELQG DVHFPASEQN FQLEPSVPDR PCEGRFTSHT SGSNSISPSC  660
SQSSNSSLGC SSVPKTQQQH GSAPQLAVKE EISMDENQCS TLIKSASHAE AELQMFVEER  720
PTMLFRSQSQ VLLSEHKPIE NLSNMQKARS DSLKIKAIYG EERCIFRLQP SWGFQRLKEE  780
IVKRFGISQD THVDLKYLDD ESEWVLLTCD ADLLECIDVY KSSSNQTVRI LVNPSIQPLL  840
NASFGQTGLS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK100046	0.0	AK100046.1 Oryza sativa Japonica Group cDNA clone:J013153P10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006651009.2	0.0	PREDICTED: protein NLP1-like
Swissprot	Q10S83	0.0	NLP1_ORYSJ; Protein NLP1
TrEMBL	A0A0D3FDE5	0.0	A0A0D3FDE5_9ORYZ; Uncharacterized protein
STRING	OBART03G02480.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11025	32	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]