PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART03G00850.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

DBB

Protein Properties

Length: 308aa MW: 31930.7 Da PI: 4.9316

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART03G00850.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19	2.8e-06	4	47	5	42
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ + +++ C ++ lC C H+ H++ pl OBART03G00850.1 4 QCDVCAAEPAAVLCCADEAALCSACDRRVHRAnrlaskHRRLPL 47 7*****************************76889999988775 PP
2	zf-B_box	26.4	1.4e-08	63	104	3	38
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 ++ C+ + ek+ fC +++ lC+dC + +H+ Ht OBART03G00850.1 63 APLCDVCREKRGLVFCVEDRAILCADCDEPIHSAndltakHT 104 579*****************************6577777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.267	1	47	IPR000315	B-box-type zinc finger
SMART	SM00336	6.9E-8	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	5.91E-6	3	47	No hit	No description
Pfam	PF00643	4.1E-5	4	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.556	61	108	IPR000315	B-box-type zinc finger
SMART	SM00336	6.2E-17	61	108	IPR000315	B-box-type zinc finger
CDD	cd00021	1.13E-7	64	108	No hit	No description
Pfam	PF00643	5.7E-6	64	105	IPR000315	B-box-type zinc finger

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MRVQCDVCAA EPAAVLCCAD EAALCSACDR RVHRANRLAS KHRRLPLVHP SSTSSGDGGA 60 AAAPLCDVCR EKRGLVFCVE DRAILCADCD EPIHSANDLT AKHTRFLLVG AKLSPAALAE 120 QPVPSSDCSS DDDAAAAATE EEYHSSAAST GAAVSAPLDA SSNGAGGGGG VGGSSISDYL 180 TTICPGWRVE DLLPDDDAFA AAAAQAGKEK DERVPFLDAD LFDVVAGRPE KKGGAWAPHV 240 PHLPAWCLDE VPVVVAASAA PAATPVKAKQ GHVRDSHWSD SDAFAVPEFS PPPPPAKRAR 300 PSSQYWCF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB001884	0.0	AB001884.1 Oryza sativa Japonica Group mRNA for zinc finger protein, complete cds, clone:R1479.
GenBank	AK105957	0.0	AK105957.1 Oryza sativa Japonica Group cDNA clone:001-205-D08, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015641370.1	0.0	B-box zinc finger protein 20 isoform X1
TrEMBL	A0A0D3FCU9	0.0	A0A0D3FCU9_9ORYZ; Uncharacterized protein
TrEMBL	I1Q583	0.0	I1Q583_ORYGL; Uncharacterized protein
STRING	ORGLA06G0229600.1	0.0	(Oryza glaberrima)
STRING	OBART03G00850.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12100	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75540.1	2e-39	salt tolerance homolog2