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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | OBART02G37080.2 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family | G2-like | ||||||||
| Protein Properties | Length: 796aa MW: 88372.1 Da PI: 5.1081 | ||||||||
| Description | G2-like family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 77.6 | 1.5e-24 | 647 | 691 | 1 | 45 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtleh 45
kpr+rWtpeLHerFv+av++LGGsekAtPk++ ++mkv+gLt++h
OBART02G37080.2 647 KPRMRWTPELHERFVDAVNKLGGSEKATPKAVQKVMKVDGLTIYH 691
79*****************************************99 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF11107 | 2.6E-46 | 1 | 211 | No hit | No description |
| Pfam | PF11107 | 1.8E-18 | 218 | 347 | No hit | No description |
| SuperFamily | SSF46689 | 3.23E-10 | 644 | 691 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 8.1E-21 | 646 | 691 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 2.6E-16 | 647 | 690 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 3.3E-6 | 649 | 689 | IPR001005 | SANT/Myb domain |
| Pfam | PF14379 | 4.0E-18 | 713 | 755 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 796 aa Download sequence Send to blast |
MEELLGLVRG FVDVLVLAGG RTSSGAAATW RSGDVKKALQ WALFFEEVFK NLRDDGQYDE 60 SASELDAALV QLASSPNFPK GIEDIQSKTL AMARELVVKH FLKTTNAENL GAVLQAVVEM 120 DMDGISASGE CNVCQEYVQS ILDMNLPSLM RTKNARDVGH STSSDEFCEE SLFTGNSQIL 180 LKELQKKLDS RSCISLAERE LNTLLKSMKK DSFDSAGSTL CTSATAQKTQ IIDKFILWKQ 240 WKAKCLSYLL DERTIRIMSG TNMIFNAPKE QWMGLFEPLK VSADSSQSGI VEVMELCLLG 300 LVARQWNSLI ESIMSHTFSS FPISKQYADL HQLLQGTTQD ECQDKLLGFK EMDICEYARQ 360 SLESEPYILW LLPPVLTAAA MPPRSSLFKI YLVEIDKQLG EAASKDRPTS TMNQLRNGKV 420 PQYLSPAITV VPALSEVTFP SFSEHRPSYI EREQCGSSIN SFDASTPMCM LASNFTSDLY 480 INKSESPNGK LSSESYAIDT SGCDSSLPPT QSLYKGNPSS LRMVYPKVSE QNSWSQEPLP 540 GPFVCPTSVD FFDQQDMTIF DQQIQDNIAA SPSTNLAKQN EWFSSGTSLQ YLESSVSAGS 600 VLKAVDATST TPSNYLHCHA QRNTSNPPNF NEICSGNIAS SNIAPTKPRM RWTPELHERF 660 VDAVNKLGGS EKATPKAVQK VMKVDGLTIY HKYRTVHHRP QLSDGRGMET TCEGLRVQIG 720 LQKQLHEQLE IQRKLQLQVE EHSKYLAMII EKQSESLRQL GALPRSLDAP TQVLDNRETC 780 EGQTGDADSA EQKPEK |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6j4k_A | 1e-20 | 647 | 699 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4k_B | 1e-20 | 647 | 699 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_A | 1e-20 | 647 | 699 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_C | 1e-20 | 647 | 699 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_D | 1e-20 | 647 | 699 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_F | 1e-20 | 647 | 699 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_H | 1e-20 | 647 | 699 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_J | 1e-20 | 647 | 699 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Search in ModeBase | ||||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AK066382 | 0.0 | AK066382.1 Oryza sativa Japonica Group cDNA clone:J013064K05, full insert sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015627299.1 | 0.0 | uncharacterized protein LOC4331121 | ||||
| Refseq | XP_015627301.1 | 0.0 | uncharacterized protein LOC4331121 | ||||
| Refseq | XP_015627302.1 | 0.0 | uncharacterized protein LOC4331121 | ||||
| Refseq | XP_025878774.1 | 0.0 | uncharacterized protein LOC4331121 | ||||
| Refseq | XP_025878775.1 | 0.0 | uncharacterized protein LOC4331121 | ||||
| TrEMBL | A0A0D3FBZ7 | 0.0 | A0A0D3FBZ7_9ORYZ; Uncharacterized protein | ||||
| STRING | OBART02G37080.1 | 0.0 | (Oryza barthii) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G28610.1 | 3e-38 | phosphate starvation response 1 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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