PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G35890.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARR-B
Protein Properties Length: 669aa    MW: 72163.2 Da    PI: 6.6901
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G35890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like28.82.8e-09214241128
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAt 28 
                      kpr++W+ eLH++Fv av+qLG  + At
  OBART02G35890.1 214 KPRVVWSVELHRKFVAAVNQLGIDNLAT 241
                      79*******************7555555 PP
2Response_reg76.59.3e-26261341109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vl vdD+p+ +++l+++l + +y +v+++ ++  al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++ +ge +++l+ +  
  OBART02G35890.1  26 VLAVDDDPVCLKVLETLLLRCQY-HVTTTNQAAIALKMLRENRdmFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNGETKTVLKGITH 117
                      799********************.***************99999********************87754.558********************* PP

                      TESEEEESS--HHHHHH CS
     Response_reg  93 GakdflsKpfdpeelvk 109
                      Ga d+l Kp+ +eel++
  OBART02G35890.1 118 GACDYLLKPVRIEELRN 134
                      ***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23004.1E-4023151No hitNo description
SuperFamilySSF521726.83E-3424150IPR011006CheY-like superfamily
SMARTSM004481.6E-2924136IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.41625140IPR001789Signal transduction response regulator, receiver domain
PfamPF000727.3E-2326135IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.50E-2627140No hitNo description
Gene3DG3DSA:1.10.10.608.2E-9212240IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MRAAEERKGV VPAARRRDQF PVGTRVLAVD DDPVCLKVLE TLLLRCQYHV TTTNQAAIAL  60
KMLRENRDMF DLVISDVHMP DMDGFKLLEL VGLEMDLPVI MLSVNGETKT VLKGITHGAC  120
DYLLKPVRIE ELRNIWQHVI RRKFSTRDRA NLDFYEECNK PPNADSDHVH GHVTCGSPDQ  180
SGRPSKKRKE YCSEEEDEGE VNTQDIDDPS APKKPRVVWS VELHRKFVAA VNQLGIDNLA  240
TTYMKYRLYL KRLSAVASQQ VSIVAALGGR DPFLHMGGFE GLQGYQAFTS SAALSSFTPH  300
GLLNSPRNNP AALGTQGVPA SKSIQTMSGS HTLSHSINDA NKYHLSLPGN QKGNLGQGLA  360
TSLGQTQMQQ KWIHEETDDL STILSGNGLS NGMSGTLQSV TSSPLLPQEL AECTQAKIVS  420
QPSIRTSSVS SEHIEGAVGV SSGLLESRVS QQSTIPLSGF SANGLLIHGS FNNTCANKLG  480
GTSSSCAPAR SSNDLMVARD TKGGASSFGG TMLLPPDTEQ KYLNFGGGNG LKQKFDDRTA  540
DSLFDPKFVW SSVPSSQLAS NIGAHHAMSQ RWNNSSSNSS NIGARMIGQA TSSGSTVIPQ  600
MKTDFLVSGD MAMPKNASDL SIPKLQSELS SSSCSFDGLL NSIVKVEKDD VTFSDDLGCG  660
DFYSLGACI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0995810.0AK099581.1 Oryza sativa Japonica Group cDNA clone:J013040N16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625496.10.0two-component response regulator ORR23
SwissprotB8AEH10.0ORR23_ORYSI; Two-component response regulator ORR23
TrEMBLA0A0D3FBL10.0A0A0D3FBL1_9ORYZ; Two-component response regulator
STRINGOBART02G35890.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-83response regulator 12