PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G32450.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 397aa    MW: 43266.9 Da    PI: 6.0481
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G32450.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.79e-11214270155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s ++GV++++++g+++A+++d  +   g +rk    g+++t+e+Aa+ ++ a++k++g
  OBART02G32450.1 214 SSFHGVTRHRWSGKYEAHLWDsSCRmEGrRRKGR-QGSYDTEEKAARSYDVAALKYWG 270
                      5799*****************7666766444554.4********************98 PP
2AP249.11.4e-15313364155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++ k+grW A+I  +        + ++lg+f t+eeAa+a++ a+ +++g
  OBART02G32450.1 313 SIYRGVTRRQKDGRWQARIGLV-----AgtRDIYLGTFKTEEEAAEAYDIAAIEIRG 364
                      57****************9995.....234************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.32E-16214280No hitNo description
SuperFamilySSF541711.05E-13214280IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-12215279IPR001471AP2/ERF domain
SMARTSM003801.3E-19215284IPR001471AP2/ERF domain
PfamPF008471.3E-7215270IPR001471AP2/ERF domain
PROSITE profilePS5103217.346215278IPR001471AP2/ERF domain
PRINTSPR003671.6E-5216227IPR001471AP2/ERF domain
PfamPF008471.9E-9313364IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-17313374IPR016177DNA-binding domain
CDDcd000185.08E-23313372No hitNo description
Gene3DG3DSA:3.30.730.104.3E-19314373IPR001471AP2/ERF domain
SMARTSM003808.5E-28314378IPR001471AP2/ERF domain
PROSITE profilePS5103218.571314372IPR001471AP2/ERF domain
PRINTSPR003671.6E-5354374IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MSCLVDSSPF LLPLAVVEAS GSFVPIDPFR PREMESSLKE EKAAGESGDD EKAERSSPIN  60
LNSLPATAAC AAAAPDEDGL HSAVESGAKD SNTTKGVESL GTGHKKIPKR EVVDEVDVQT  120
CAEGKNDSVV PSSSKNPIND KNAKANVAEN GQSADGIPED QRVTILSVVK KDEPADDVRD  180
SVNPVTVVGY RDEKGGTSGT AGTTAVRPAG TRSSSFHGVT RHRWSGKYEA HLWDSSCRME  240
GRRRKGRQGS YDTEEKAARS YDVAALKYWG QNTKLNFSVS EYERELEDIR DMSREECVTY  300
LRRRSSCFSR GASIYRGVTR RQKDGRWQAR IGLVAGTRDI YLGTFKTEEE AAEAYDIAAI  360
EIRGKNAVTN FDRSNYVEKG MHCIEGAGLK LLASKPE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240247GRRRKGRQ
2301322RRRSSCFSRGASIYRGVTRRQK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9402200.0FJ940220.1 Oryza sativa Japonica Group clone KCS100F03 AP2D8 transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626428.10.0AP2-like ethylene-responsive transcription factor PLT1 isoform X1
RefseqXP_015626429.10.0AP2-like ethylene-responsive transcription factor PLT1 isoform X1
RefseqXP_015626430.10.0AP2-like ethylene-responsive transcription factor PLT1 isoform X1
TrEMBLA0A0D3FAG70.0A0A0D3FAG7_9ORYZ; Uncharacterized protein
STRINGOBART02G32450.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118882933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.12e-68AINTEGUMENTA-like 5