PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G30940.6
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 275aa    MW: 31423.1 Da    PI: 6.7895
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G30940.6genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.45.1e-084352055
                     HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH 20 feeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     +e LrellP+     ++K +Ka+ L +++eYI+ Lq
  OBART02G30940.6  4 LEILRELLPHT----DQKRDKASFLSEVIEYIRFLQ 35
                     789*******8....8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.15134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-9444IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-5435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.78E-6439No hitNo description
Gene3DG3DSA:4.10.280.106.4E-12547IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MKTLEILREL LPHTDQKRDK ASFLSEVIEY IRFLQEKVQK YEEADPERNH EDSKSMPWAK  60
VYYRSCWRNT KNTSQVQGED LSPSTQDMNN EQYGPKHISA AQPALFNTQS VTSTTTSSSH  120
MATGTPQNLE KNSTPSNQPP WLSMSTMRQE SEPGNKMPNK HEKQTLHDEN HSISSAYSQG  180
LFNRLTEALK KSGLDPSQAN IAVEINLAKR ARDNTSDNSK IVCLIIILYL CPDFTSQINE  240
DEEPIQITKR RFDKSSSHHL ALGCICDDWQ PRRLP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0682280.0AK068228.1 Oryza sativa Japonica Group cDNA clone:J013148L19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627558.11e-157transcription factor BIM2
RefseqXP_015627559.11e-157transcription factor BIM2
RefseqXP_015627560.11e-157transcription factor BIM2
TrEMBLA0A0D3F9Y80.0A0A0D3F9Y8_9ORYZ; Uncharacterized protein
TrEMBLA0A0D3F9Z10.0A0A0D3F9Z1_9ORYZ; Uncharacterized protein
STRINGOBART02G30940.30.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.15e-23BES1-interacting Myc-like protein 2