PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

OBART02G29970.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 52aa MW: 5676.47 Da PI: 3.9179

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART02G29970.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	51.5	2.8e-16	2	51	47	96
DUF260 47 kalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 ++l +++ da+sslvyeA+ r+rdPvyG+vg i+ +q+q++ql+ +la+ OBART02G29970.1 2 AELLAQQQGDAVSSLVYEANDRMRDPVYGCVGAISFMQNQVSQLQMQLAV 51 56778999**************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	9.636	1	52	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.9E-14	3	51	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 52 aa Download sequence Send to blast
MAELLAQQQG DAVSSLVYEA NDRMRDPVYG CVGAISFMQN QVSQLQMQLA VA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012610	2e-71	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015624534.1	1e-27	LOB domain-containing protein 12
Swissprot	Q8LBW3	8e-21	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A0D3F9M3	1e-28	A0A0D3F9M3_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0NK14	4e-27	A0A0E0NK14_ORYRU; Uncharacterized protein
STRING	ORUFI02G31640.1	6e-28	(Oryza rufipogon)
STRING	OBART02G29970.1	2e-29	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP882	38	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	3e-23	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]