 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
OBART02G28630.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
bHLH |
| Protein Properties |
Length: 325aa MW: 35053.6 Da PI: 8.4911 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OBART02G28630.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 44.3 | 3.1e-14 | 38 | 89 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i+ A+e++k+L+
OBART02G28630.1 38 QRMTHIAVERNRRRQMNEYLAVLRSLMPEP---YVQRGDQASIVGGAIEFVKELE 89
79****************************...*******************995 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 325 aa
Download sequence Send
to blast |
MPPPSATLTS SAPRRQGRRR RRRRRAKSCK SREETETQRM THIAVERNRR RQMNEYLAVL 60
RSLMPEPYVQ RGDQASIVGG AIEFVKELEQ QLQSLEAQKR TLLPHHKARC DDATPMHNAS 120
GSNVGAGGCM EPTTTTSNCS SSVTEDAPSA DAPPFAQFFA YPQYVWCHSP RDSTTTTTAA 180
SASASASASS SSPATVAAAL QSEHRSGLAD IEVSLVETHA SVRVMSPRRP GQLLKMIAGL 240
QALRLTVLHL NVTTLDSLVL YTLSVKVEEG CSLTTVDDIA AAVHHVLCIV DAEAAASEHL 300
LAAGQLTTTA TAAAVAKREL ATYMY
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 13 | 20 | RRQGRRRR |
| 2 | 14 | 23 | RQGRRRRRRR |
| 3 | 17 | 24 | RRRRRRRR |
| 4 | 18 | 24 | RRRRRRR |
| 5 | 38 | 49 | RMTHIAVERNRR |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK060695 | 0.0 | AK060695.1 Oryza sativa Japonica Group cDNA clone:001-030-D07, full insert sequence. |
