PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G26880.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 709aa    MW: 74363.2 Da    PI: 5.8061
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G26880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS272.41.5e-833517083374
             GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      + L ++A+a ++g+   a+++Larl+++  + g+p+ R a+y++eAL   la+  s+  ++  +s+    +++ +laa+k fs++sP+l+f+++
  OBART02G26880.1 351 DELAAAAKATEAGNSVGAREILARLNQQLPQLGKPFLRSASYLKEALLLALAD--SHHGSSGVTSPL---DVALKLAAYKSFSDLSPVLQFTNF 439
                      7899*************************************************..444444555555...499********************* PP

             GRAS  97 taNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                      ta qa+l+++ g   +++H+iDfd++ G+QW+++lq+La R+       p l++T++ s +s++  el+ t+++L++fA+el++pfefn++   
  OBART02G26880.1 440 TATQALLDEIGGMatSCIHVIDFDLGVGGQWASFLQELAHRRgaggMALPLLKLTAFISTASHHPLELHLTQDNLSQFAAELRIPFEFNAV--- 530
                      ***********998899************************966444489*********9*9****************************8... PP

             GRAS 185 rledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                      +l+++++ eL  ++ +E++aV+l +          +     +++L+lvk+l Pkvvv +++  d+ + +F ++fl++++ ++ l+dsl+a  + 
  OBART02G26880.1 531 SLDAFNPVELISSSgDEVVAVSLPVGYSARA---PP----LPAILRLVKQLCPKVVVAIDHGGDRADLPFSQHFLNCFQSCVFLLDSLDAA-GI 616
                      889998888866666********99766554...44....556*********************************************888.78 PP

             GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                      +++ + k+Er+l++++++++v  ++++     +++  Wr+ + + GFkpv+ s+ a++qa++ll++v+++g++ve++ ++l+l+W++ +Lvs+S
  OBART02G26880.1 617 DADSACKIERFLIQPRVEDAVIGRHKA-----QKAIAWRSVFAATGFKPVQPSNLAEAQADCLLKRVQVRGFHVEKRGAALTLYWQRGELVSIS 705
                      99*******************999888.....78899********************************************************* PP

             GRAS 372 aWr 374
                      +Wr
  OBART02G26880.1 706 SWR 708
                      **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.311323688IPR005202Transcription factor GRAS
PfamPF035145.1E-81351708IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MRAALFGTER SGVVDHGGGD KEELFWPAGK GGLVVVEPRS VLDCTRSPSP PYSTSTLSSS  60
LGGGSADSTG VAAVSESSTA AAGATKWGAP GEHGGGGKEE WGGGCELPPI PGALDVGLVE  120
GEGWDATATL GNAAGPDQSF LNWIIGAGGD LEQPGPPLPV LQQPLIDNAG FGIPAVDTMG  180
FSLDHPLSGV ASDLSSSGAH TATGGGGTAS LGFGLFSPEA TSLEQPPPSM LFHEGIDTKP  240
PLLGAQPQFL LNHYQPQPPN PAAALFMPLP PFPEHNHQSP HLQPPLKRHH AIPDDLYLAR  300
NQQQSSAVAP GLAYSPPLHG PAPFQLHPSP PPIRGAMKST AAEAAQQQLL DELAAAAKAT  360
EAGNSVGARE ILARLNQQLP QLGKPFLRSA SYLKEALLLA LADSHHGSSG VTSPLDVALK  420
LAAYKSFSDL SPVLQFTNFT ATQALLDEIG GMATSCIHVI DFDLGVGGQW ASFLQELAHR  480
RGAGGMALPL LKLTAFISTA SHHPLELHLT QDNLSQFAAE LRIPFEFNAV SLDAFNPVEL  540
ISSSGDEVVA VSLPVGYSAR APPLPAILRL VKQLCPKVVV AIDHGGDRAD LPFSQHFLNC  600
FQSCVFLLDS LDAAGIDADS ACKIERFLIQ PRVEDAVIGR HKAQKAIAWR SVFAATGFKP  660
VQPSNLAEAQ ADCLLKRVQV RGFHVEKRGA ALTLYWQRGE LVSISSWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-233497084375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195103GGKEEWGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040370.0AP004037.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1001_D02.
GenBankAP0048830.0AP004883.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0516F12.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627415.10.0scarecrow-like protein 6
TrEMBLA0A0D3F8J00.0A0A0D3F8J0_9ORYZ; Uncharacterized protein
STRINGOBART02G26880.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.19e-94GRAS family protein