PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART02G24080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | YABBY | ||||||||
Protein Properties | Length: 91aa MW: 9450.94 Da PI: 9.6149 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 40.1 | 1.3e-12 | 3 | 42 | 23 | 62 |
YABBY 23 avsvPstslfkvvtvrCGhCtsllsvnlakasqllaaesh 62 vsvPs+slfk+vtvrCGhC+sll vn+ ++a OBART02G24080.1 3 CVSVPSSSLFKTVTVRCGHCSSLLPVNIGGLLLPTSAAAT 42 69**************************988877666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.6E-11 | 3 | 40 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 91 aa Download sequence Send to blast |
MACVSVPSSS LFKTVTVRCG HCSSLLPVNI GGLLLPTSAA ATVATAPPPP PPPPPPAAAH 60 FPCVHKKLRS KREETREEGR GGKKRDDDVA S |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK066836 | 3e-80 | AK066836.1 Oryza sativa Japonica Group cDNA clone:J013088I01, full insert sequence. | |||
GenBank | AP005420 | 3e-80 | AP005420.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0418B08. | |||
GenBank | AP005568 | 3e-80 | AP005568.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1299_A11. | |||
GenBank | AP014965 | 3e-80 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012617 | 3e-80 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0D3F7L9 | 2e-57 | A0A0D3F7L9_9ORYZ; Uncharacterized protein | ||||
STRING | OBART02G24080.1 | 3e-58 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP51640 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00180.2 | 9e-09 | YABBY family protein |