PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G21440.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 384aa    MW: 40816 Da    PI: 6.6197
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G21440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.46.5e-07171192223
                      EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                       C +Cgk F+r  nL+ H+r H
  OBART02G21440.1 171 FCDICGKGFRRDANLRMHMRAH 192
                      6*******************99 PP
2zf-C2H212.40.00047256280123
                      EEETTTT..EEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCg..ksFsrksnLkrHirtH 23 
                      y C+ Cg  k+F    +L++H+r +
  OBART02G21440.1 256 YACERCGgkKRFAVLADLRSHLRHC 280
                      89********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.24E-6167192No hitNo description
PROSITE profilePS5015711.614170192IPR007087Zinc finger, C2H2
SMARTSM003550.0019170192IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.5E-6172192IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280172192IPR007087Zinc finger, C2H2
SMARTSM0035573218251IPR015880Zinc finger, C2H2-like
SMARTSM0035517256279IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MKSTTHLLAG GGSVAPPTAA TAPTLAMEVG DPSGALVGGA GGAGAGGGDG DARDALLRLV  60
ALGDRMAAVR RRIAASISGE SGPLSSSDIH SVSSEISSAA HLVVLNAASL LSSTVASLPA  120
PPPPPATTVQ ELPPVVVSVP QEPPQEAAKG DGDYDVVELD ASELLAEHVH FCDICGKGFR  180
RDANLRMHMR AHGDRFKTLD ALSRPGQPKP PAGREVRFSC PYAGCNRNRA HRRFRPLKSA  240
VCARNHFRRS HCPKLYACER CGGKKRFAVL ADLRSHLRHC GEEAQWRCSC GTTFSRKDKL  300
FGHLALFEGH TPAIAEPNKG VATAAAEASI SMMEEGGVEA NCDREEDEEG GFDPKFFQEW  360
MEELRGGAVA PNWPMVGRDD WEDE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056990.0AP005699.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0046L23.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627485.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLA0A0D3F6Q40.0A0A0D3F6Q4_9ORYZ; Uncharacterized protein
STRINGOBART02G21440.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125503236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.33e-70C2H2 family protein