PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

OBART02G19940.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 201aa MW: 21210.7 Da PI: 6.9772

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART02G19940.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.1	1.6e-08	91	120	2	34
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...T CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskap 34 r+h +Er RR++i++ f Lr+l+P++ + OBART02G19940.1 91 ERMHIFAERERRRKIKNMFTDLRDLVPSL---T 120 578999**********************8...3 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.24E-9	87	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.63E-7	88	122	No hit	No description
PROSITE profile	PS50888	10.099	89	146	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-7	89	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.0E-6	92	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF55021	2.89E-6	121	173	No hit	No description
PROSITE profile	PS51671	8.573	124	201	IPR002912	ACT domain
CDD	cd04873	3.23E-4	125	186	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008152	Biological Process	metabolic process
GO:0016597	Molecular Function	amino acid binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MAQEGTSSNA PPAAASMGSG DGDNKEGTGE SGNNQLLLPA IAASADKGKG VVAGTGNVDA 60 KGKTTATPPA ASSTNAPNNQ GGGGGGGRSR ERMHIFAERE RRRKIKNMFT DLRDLVPSLT 120 NKAFINVSVA RRPGVLTMIV DVLERHSIDV VTAQIASDQS RSLFTIHTSV DRERGMFMDT 180 ATAEEIYQLA VSEIMVWLHS E

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005611	0.0	AP005611.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0051E21.
GenBank	AP014958	0.0	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025878857.1	7e-71	transcription factor bHLH95
TrEMBL	A0A0D3F675	1e-145	A0A0D3F675_9ORYZ; Uncharacterized protein
STRING	OBART02G19940.1	1e-145	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2005	36	91