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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OBART02G19680.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
Trihelix |
Protein Properties |
Length: 410aa MW: 46666.8 Da PI: 6.7534 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OBART02G19680.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 63.3 | 5.6e-20 | 96 | 194 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcp 80
+W +v++L+ a+ +++e++ + ++k++W+ vs++m ergf +sp+qC++k+++lnkryk+++e+ +++t ++++++
OBART02G19680.1 96 KWISGMVKLLVSAVAYIDEDVDMDYgtgsaarrkhamlKRKGKWRLVSAAMTERGFPVSPQQCEDKFNDLNKRYKRMTEILGRGTaCQVVEHPE 189
799************8888877542334467778888899*******************************************95488887777 PP
trihelix 81 yfdql 85
+++ +
OBART02G19680.1 190 LLEGM 194
76655 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 410 aa
Download sequence Send
to blast |
MEGNLPPRGA LVHGHGGGVG AFDLEATMQP PPPFHFAQDP HLHHHQGMVP VRGNPMLDLG 60 NVVKTSPSDE EDVDDGHHHG GGGGSGKEAS QWHRVKWISG MVKLLVSAVA YIDEDVDMDY 120 GTGSAARRKH AMLKRKGKWR LVSAAMTERG FPVSPQQCED KFNDLNKRYK RMTEILGRGT 180 ACQVVEHPEL LEGMRLSGKL KEEARKHLNS KHLHYEEMCS YHNRNKMCLF DDPALQKSLR 240 LALRSGEEHA KKNPFGYDDE DFSDDDDEDE EFDDLEVSAE DHHHGIHGAK RLKHDQEETH 300 FGSNLSEVAV IDMNKMLSEG SGGPTAEKSP STPGMRDIRL EKRRLKIKAQ MLKIEQKHFK 360 WLRFSKEKDR ELEKMRLENE KMKLENERLE LELKLKEIEM GIKPKKIFSD
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP004877 | 0.0 | AP004877.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0472F10. |
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT1G21200.1 | 1e-63 | sequence-specific DNA binding transcription factors |