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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
OBART02G11580.2 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family |
bZIP |
| Protein Properties |
Length: 303aa MW: 32781.7 Da PI: 7.2224 |
| Description |
bZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OBART02G11580.2 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | bZIP_1 | 52.5 | 1.1e-16 | 147 | 198 | 4 | 58 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58
+kr rr+ +NRe+ArrsR+RK+a ++ Le+ v++L +eN +L k+l + ++
OBART02G11580.2 147 VKRMRRMVSNRESARRSRKRKQAHLADLETQVDQLRGENASLFKQLT---DANQQ 198
79**************************************9995554...44443 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0071333 | Biological Process | cellular response to glucose stimulus |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0046982 | Molecular Function | protein heterodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 303 aa
Download sequence Send
to blast |
MKKCPSELNF EAFFHGERGE DDAPAAVRHV LRRRPLQLRL RGLGDEGVLN SKHGKGRGEI 60
IFQSTITGVI PNHIWPQSQS LNARHPAVYT IESQSSICAA ASPTSATTLN MKESQTLGGT 120
SGSDSDSESL LDIEGGPCEQ STNPLDVKRM RRMVSNRESA RRSRKRKQAH LADLETQVDQ 180
LRGENASLFK QLTDANQQFT TAVTDNRILK SDVEALRVKV KMAEDMVARG ALSCGLGHLG 240
GLSPALNPRQ GACRVPDVLT GLDYAGDDPF TGLSPPEQVQ MPGGGEVGDA WGWDNHSNGA 300
MSK
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| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 160 | 166 | RRSRKRK |
| 2 | 160 | 167 | RRSRKRKQ |
| 3 | 162 | 167 | SRKRKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator that possesses broad binding specificity for DNA promoter elements with the core sequence 5'-ACGT-3'. May be involved in the regulation of genes expressed during seed development (PubMed:7919992). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:7919992}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK070674 | 0.0 | AK070674.1 Oryza sativa Japonica Group cDNA clone:J023063K11, full insert sequence. |
| GenBank | RICRITA1A | 0.0 | L34551.1 Oryza sativa transcriptional activator protein (RITA-1) mRNA, complete cds. |
| Publications
? help Back to Top |
- Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
J. Biol. Chem., 2001. 276(17): p. 14139-52
[PMID:11133985] - Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Izawa T,Foster R,Nakajima M,Shimamoto K,Chua NH
The rice bZIP transcriptional activator RITA-1 is highly expressed during seed development.
Plant Cell, 1994. 6(9): p. 1277-87
[PMID:7919992]
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