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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART02G11580.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bZIP | ||||||||
Protein Properties | Length: 280aa MW: 29891.3 Da PI: 5.9569 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 52.5 | 1e-16 | 124 | 175 | 4 | 58 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 +kr rr+ +NRe+ArrsR+RK+a ++ Le+ v++L +eN +L k+l + ++ OBART02G11580.1 124 VKRMRRMVSNRESARRSRKRKQAHLADLETQVDQLRGENASLFKQLTDAN---QQ 175 79**************************************9996555444...43 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.2E-17 | 121 | 185 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.185 | 123 | 175 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.5E-14 | 124 | 173 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.31E-13 | 124 | 176 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 4.1E-13 | 125 | 176 | No hit | No description |
CDD | cd14702 | 5.80E-24 | 126 | 176 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 128 | 143 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0071333 | Biological Process | cellular response to glucose stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MKKCPSELNF EAGGRTTHPP PFAMFSAADL SSFGFADSVT STITGVIPNH IWPQSQSLNA 60 RHPAVYTIES QSSICAAASP TSATTLNMKE SQTLGGTSGS DSDSESLLDI EGGPCEQSTN 120 PLDVKRMRRM VSNRESARRS RKRKQAHLAD LETQVDQLRG ENASLFKQLT DANQQFTTAV 180 TDNRILKSDV EALRVKVKMA EDMVARGALS CGLGHLGGLS PALNPRQGAC RVPDVLTGLD 240 YAGDDPFTGL SPPEQVQMPG GGEVGDAWGW DNHSNGAMSK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 137 | 143 | RRSRKRK |
2 | 137 | 144 | RRSRKRKQ |
3 | 139 | 144 | SRKRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that possesses broad binding specificity for DNA promoter elements with the core sequence 5'-ACGT-3'. May be involved in the regulation of genes expressed during seed development (PubMed:7919992). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:7919992}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK070674 | 0.0 | AK070674.1 Oryza sativa Japonica Group cDNA clone:J023063K11, full insert sequence. | |||
GenBank | RICRITA1A | 0.0 | L34551.1 Oryza sativa transcriptional activator protein (RITA-1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015625526.1 | 0.0 | bZIP transcription factor RISBZ3-like isoform X1 | ||||
Swissprot | Q6ETX0 | 0.0 | RSBZ3_ORYSJ; bZIP transcription factor RISBZ3 | ||||
TrEMBL | A0A0D3F3D7 | 0.0 | A0A0D3F3D7_9ORYZ; Uncharacterized protein | ||||
STRING | OS02T0266800-01 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24800.1 | 4e-40 | basic leucine zipper 9 |
Publications ? help Back to Top | |||
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