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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART02G11110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 289aa MW: 30364.2 Da PI: 7.0899 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.6 | 1.1e-13 | 131 | 181 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++h +Er+RR+++N+ ++ Lr+l+P + k+ + a+i +v+YIk+Lq OBART02G11110.1 131 KMSHITVERNRRKQMNEHLAVLRSLMPCF---YVKRGDQASIIGGVVDYIKELQ 181 789*************************9...9********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.87E-13 | 127 | 185 | No hit | No description |
PROSITE profile | PS50888 | 15.237 | 129 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.15E-17 | 129 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.1E-11 | 131 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.4E-13 | 131 | 192 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.0E-11 | 135 | 186 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MADGGSGGLC ELFSDDHRDI RHVADADLFR ILETWEECIN GGAGGGGGGV SLAGVADQGA 60 AAASTGAGGG ARMTTTTTAA NGRRREGRDE EKGGGGGGGP PAQKKQKGSS SSSSSPAALA 120 AAVGDGDGAA KMSHITVERN RRKQMNEHLA VLRSLMPCFY VKRGDQASII GGVVDYIKEL 180 QQVLRSLEAQ EESEGLCRPG AQPRGRRRRR RRSWVEFAGP NLVLKTVSHR APGQALKIIA 240 ALESLSLEIL HVSICTVDDA TVLSFTIKIG IECELSAEEL VQEIQQTFL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 82 | 106 | RRREGRDEEKGGGGGGGPPAQKKQK |
2 | 203 | 210 | RGRRRRRR |
3 | 203 | 211 | RGRRRRRRR |
4 | 205 | 211 | RRRRRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Together with FMA and SPCH, regulates the stomata formation. Required for the differentiation of stomatal guard cells, by promoting successive asymmetric cell divisions and the formation of guard mother cells. Promotes the conversion of the leaf epidermis into stomata. {ECO:0000269|PubMed:17183265, ECO:0000269|PubMed:17183267}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By UV, flagellin, and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004801 | 0.0 | AP004801.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0613F08. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624375.2 | 4e-89 | transcription factor SPEECHLESS | ||||
Swissprot | Q9M8K6 | 3e-47 | MUTE_ARATH; Transcription factor MUTE | ||||
TrEMBL | A0A0D3F386 | 0.0 | A0A0D3F386_9ORYZ; Uncharacterized protein | ||||
STRING | OBART02G11110.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3484 | 35 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06120.1 | 4e-48 | bHLH family protein |