PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G10550.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 277aa    MW: 28716.4 Da    PI: 6.4055
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G10550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.22.7e-11150196551
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 
                      kr +r   NR +A+rsR RK+++i eLe+ v +L+ e +aL  ++  
  OBART02G10550.1 150 KRVKRILANRQSAQRSRVRKLQYISELERSVTTLQMEVSALSPRVAF 196
                      899**********************************9999877655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.1E-13146210IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.611148204IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.0E-14150204No hitNo description
SuperFamilySSF579591.27E-11150204No hitNo description
PfamPF001707.6E-10150200IPR004827Basic-leucine zipper domain
CDDcd147034.75E-21151201No hitNo description
PROSITE patternPS000360153168IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MAQLPPRAPS AAAAAAAAAG QEWSAMAAAG EFLGFAAARR GAHRRSASDS AAFLMEAAVP  60
MDDVIVGVGG GGEFDRLDDE QLMSMFSDVE APAVSDGGGG GGGERGPAGE AHLMDMGDGD  120
DGMGATSPAG AGAMAAVAAA AAADGIADPK RVKRILANRQ SAQRSRVRKL QYISELERSV  180
TTLQMEVSAL SPRVAFLDHQ RSLLTVGNSH LKQRIAALAQ DKIFKDAHQE ALKKEIERLR  240
QVYHQQQIKA TGGADIATAA SMQAKHELLA CEGAAMR
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By white light. {ECO:0000269|PubMed:18065552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622790.11e-138basic leucine zipper 19
SwissprotQ6K3R91e-139BZP19_ORYSJ; Basic leucine zipper 19
TrEMBLA0A0D3F3240.0A0A0D3F324_9ORYZ; Uncharacterized protein
STRINGOBART02G10550.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132238125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.13e-57bZIP family protein