PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OBART02G08990.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 348aa MW: 37280.5 Da PI: 9.9964 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 54.7 | 1.3e-17 | 178 | 211 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+ttkTplWR+gp g+k+LCnaCG+++rk + OBART02G08990.1 178 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 211 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 6.18E-13 | 169 | 212 | No hit | No description |
SMART | SM00401 | 1.1E-16 | 172 | 223 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.268 | 176 | 208 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.2E-14 | 176 | 211 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.35E-12 | 177 | 205 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 178 | 203 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.6E-15 | 178 | 211 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 348 aa Download sequence Send to blast |
MSTIYMSQLP ATLPLMEGDQ DQGLYPAFHR AKDPPILFPF MIDSAVEHQG QSYGDQGLRR 60 QQVLGESNQQ FNDHMMMGGS DVFLTPSPFR PTIQSIGSDM IQRSSYDPYD IESNNKQHAN 120 GSTSKWMSTP PMKMRIIRKG AATDPEGGAV RKPRRRAQAH QDESQQQLQQ ALGVVRVCSD 180 CNTTKTPLWR SGPCGPKSLC NACGIRQRKA RRAMAAAANG GAAVAPAKSV AAAPVNNKPA 240 AKKEKRAADV DRSLPFKKRC KMVDHVAAAV AATKPTAAGE VVAAAPKKDQ DHVIVVGGEN 300 AAATSKPAQN PISKAAAASP AFFHGLPRDE ITDAAMLLMT LSCGLVHS |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250|UniProtKB:Q9SZI6, ECO:0000269|PubMed:23548780}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269|PubMed:23548780}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK099607 | 0.0 | AK099607.1 Oryza sativa Japonica Group cDNA clone:J013048G01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015625859.1 | 0.0 | protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1-like | ||||
Swissprot | Q6YW48 | 0.0 | CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1 | ||||
TrEMBL | A0A0D3F2J7 | 0.0 | A0A0D3F2J7_9ORYZ; Uncharacterized protein | ||||
STRING | OBART02G08990.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1893 | 38 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G56860.1 | 1e-16 | GATA family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|