PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G07320.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 185aa    MW: 20777.9 Da    PI: 11.1275
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G07320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.75.4e-072746120
                     EEETTTTEEESSHHHHHHHH CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHi 20
                     ++Cp C k+F+r  nL+ H+
  OBART02G07320.1 27 FSCPVCRKTFNRYNNLQMHM 46
                     89*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.58E-62349No hitNo description
PROSITE profilePS5015710.4922754IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.0E-62746IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0552749IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802949IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-498132IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.38E-598132No hitNo description
SMARTSM00355160112132IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MGLVLLVQEL QYWIPTAAQI LAGATQFSCP VCRKTFNRYN NLQMHMWGHG SQYRRGGTAA  60
LRGAQPTAML RLPCYCCAAG CRNHIDHPRA RPLKDFRTLQ THYRRRHGAR DFACRRCAKR  120
FAVRGDWRTH EKNCGRLWRC ACGAHFRHKR SLNDHARAFG AAHAHAGAAA EDDGRAAAAA  180
AGVLR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1087290.0AK108729.1 Oryza sativa Japonica Group cDNA clone:002-150-D01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624987.21e-106zinc finger protein WIP5
SwissprotQ9SVY12e-91ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A0D3F1Z51e-132A0A0D3F1Z5_9ORYZ; Uncharacterized protein
STRINGOBART02G07320.11e-132(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.13e-85C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]