PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G07230.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 483aa    MW: 51397.6 Da    PI: 8.797
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G07230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.83.6e-11185223341
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeae 41 
                      + k  rr+++NReAAr+sR+RKka+i++Le+    L++ 
  OBART02G07230.1 185 DAKTLRRLAQNREAARKSRLRKKAYIQNLETSRIRLSQL 223
                      67999*************************865555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.3E-8182227No hitNo description
SMARTSM003382.9E-8183246IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.036185230IPR004827Basic-leucine zipper domain
PfamPF001701.7E-8186225IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.82E-7187230No hitNo description
PROSITE patternPS000360190205IPR004827Basic-leucine zipper domain
PfamPF141442.5E-28272355IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MGDRPWQQQL QPHDQQAASC SVTAGMMMQA SATSSSIHGN NIIRKDPGGG YDMAELDHIF  60
LYLNSQDQAS AAIQEQPQTL NIFPSQPMHA GEPSPKGSSS MAAINSAPSN NALAIAAGSS  120
KRPLAAAAAG GQPSRLNNPA DQPSASGKDG KAAVVKKEGG GGGGKHHGGA SSAAASEHEG  180
PKTPDAKTLR RLAQNREAAR KSRLRKKAYI QNLETSRIRL SQLEQELVQR SRTQGAILGG  240
GAFSAGVGGQ SPEAAWFDGE YARWVESHER MMAHMRAAVE EQPQHGGVAA AAAEAQLRQL  300
VDAAVAHHGV LVELKAAVAS ADVFHLVSGT WLPAAERCFL WIGGFRPSEL IKMMARHAEP  360
LTEQQAAGVY GVQQSARERE EALDRDLHAT HHALSDAVSS DSLLLFPPST GATAYSDADA  420
LRLQTLYKLP QILTARQSAR CFLAIADHSH RLRALTSLWL SRPRHPDQPA PPPPPPPPIN  480
PRN
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0041841e-160AP004184.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1225_F07.
GenBankAP0149581e-160AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126101e-160CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626935.10.0transcription factor TGAL9-like isoform X1
SwissprotQ0E3420.0TGAL9_ORYSJ; Transcription factor TGAL9
TrEMBLA0A0D3F1Y50.0A0A0D3F1Y5_9ORYZ; Uncharacterized protein
STRINGOBART02G07230.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27323669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.32e-88bZIP family protein
Publications ? help Back to Top
  1. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]