 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OBART02G07170.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
C3H |
| Protein Properties |
Length: 300aa MW: 31111.4 Da PI: 10.1391 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OBART02G07170.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 24.1 | 6.3e-08 | 101 | 126 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
kt+lC+ + Ck Gd+C+FaHg+
OBART02G07170.1 101 KTRLCNKYNTAEGCKWGDKCHFAHGE 126
8***********************96 PP
|
| 2 | zf-CCCH | 34.8 | 2.8e-11 | 266 | 291 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+kt+lC +f + G C +GdrC+FaHg+
OBART02G07170.1 266 FKTKLCENFTK-GSCTFGDRCHFAHGE 291
69*********.*************96 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50103 | 12.333 | 33 | 61 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.3 | 33 | 60 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 6.8E-6 | 34 | 60 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.2E-6 | 35 | 59 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.6E-14 | 96 | 131 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.96E-8 | 98 | 130 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.069 | 99 | 126 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.075 | 99 | 127 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 5.1E-5 | 101 | 126 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF54791 | 2.53E-14 | 161 | 240 | IPR004088 | K Homology domain, type 1 |
| SMART | SM00322 | 1.9E-9 | 169 | 239 | IPR004087 | K Homology domain |
| PROSITE profile | PS50084 | 14.676 | 170 | 234 | IPR004088 | K Homology domain, type 1 |
| Gene3D | G3DSA:3.30.1370.10 | 1.8E-14 | 170 | 238 | IPR004088 | K Homology domain, type 1 |
| CDD | cd00105 | 5.08E-13 | 172 | 234 | No hit | No description |
| Pfam | PF00013 | 1.5E-10 | 172 | 236 | IPR004088 | K Homology domain, type 1 |
| Gene3D | G3DSA:4.10.1000.10 | 1.8E-16 | 263 | 296 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 4.32E-9 | 265 | 295 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 6.2E-8 | 265 | 291 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 17.009 | 265 | 292 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 5.7E-9 | 266 | 291 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 300 aa
Download sequence Send
to blast |
MEGGGRKRGK PDGANGAGGK RARESESFQT GVGSKSKPCT KFFSTSGCPF GEGCHFLHHF 60
PGGYQAVAKM TNLGGPAIAP PPGRMPMGNA VPDGPPTPTV KTRLCNKYNT AEGCKWGDKC 120
HFAHGERELG KPMLMDSSMP PPMGPRPTGH FAPPPMPSPA MSTPASFGAS ATAKISVDAS 180
LAGGIIGRGG VNTKQISRVT GAKLAIRDHE SDTNLKNIEL EGTFDQIKNA SAMVRELIVS 240
IGGGAPPQGK KPVGGSHRGG GPGSNFKTKL CENFTKGSCT FGDRCHFAHG ENELRKSAAA
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK242341 | 0.0 | AK242341.1 Oryza sativa Japonica Group cDNA, clone: J075199P17, full insert sequence. |
