 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OBART02G04680.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
C3H |
| Protein Properties |
Length: 427aa MW: 49130.5 Da PI: 9.5733 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OBART02G04680.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 22.5 | 2e-07 | 11 | 34 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
ykt+lC ++r G C++ d+C+FaHg
OBART02G04680.1 11 YKTKLCALWQR-GNCNR-DTCSFAHG 34
9**********.*****.*******8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 427 aa
Download sequence Send
to blast |
MLGPPRRGPA YKTKLCALWQ RGNCNRDTCS FAHGHGDIRR PPSSRGGAFP HHPGRRDYRG 60
GDFRGRIDRR FSPRRRHSPG RESRGHRPLY DRRPSSRERD SSYSRSPSRK SERRHEKKTD 120
DGETNSSRSL SLSDNNDEKK KDKFSSGDEK EDHEKQLKQI RLDMEALRDD KTQMEVILDE 180
KIDEVRKISS KVNDLEVQLR REKDECHRMT SKMKKFIKAH ARFLKAQEEV KRSQARFERL 240
GDLLASDILK RGVNEEGSSV NEDLDERSPN TAATKKRSIP YSTSEEAKAV KKRRERDSDT 300
MTRSDKYRSD GTDFDKTSKG TEATKSLYLK KKLWEDEKNK LGANIFTEKV KGSPVRHVLP 360
STGMAAHAID DLNEAIELED RHESIDALLE NDADDKTRSP AIPLQPPPVV QNAYEQYEGD 420
DEEVDVE
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 274 | 293 | KKRSIPYSTSEEAKAVKKRR |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK065198 | 0.0 | AK065198.1 Oryza sativa Japonica Group cDNA clone:J013002E19, full insert sequence. |
