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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OBART02G04450.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
Whirly |
| Protein Properties |
Length: 319aa MW: 34664.3 Da PI: 10.1494 |
| Description |
Whirly family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OBART02G04450.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Whirly | 181.5 | 1.5e-56 | 143 | 280 | 2 | 139 |
Whirly 2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95
v+k+kaal++++++p+f++l+sg +++++G+++l++ +a+++rkyd++kkq fals+tev++l++l++ esceffhdp++k+s+eG+v+k+l+
OBART02G04450.1 143 VFKGKAALSMQPILPSFSKLESGGSRVNKNGSVMLTFFPAVGQRKYDYSKKQLFALSPTEVGSLISLGPAESCEFFHDPSMKSSHEGQVKKSLS 236
9********************************************************************************************* PP
Whirly 96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
v Pl + sG+f+n++v n+l+k+ e++s+P+skaef+v+r++l+
OBART02G04450.1 237 VTPLGNDSGYFLNITVLNNLQKTTERLSLPISKAEFTVMRTALS 280
*****************************************985 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 319 aa
Download sequence Send
to blast |
MAHSLMAVGP RRPDWAVGWP TCQARKRRHR CGWLPETSGA FPAAFFSSPI PFGIRFSVGN 60
ATAAESQGQR CSASPASSPP PPVAQSVSGV LSQSLVSPFD PRDPRVTDLK DALWSGSLTF 120
QHALSTFAAD ENTSGRKFAS YTVFKGKAAL SMQPILPSFS KLESGGSRVN KNGSVMLTFF 180
PAVGQRKYDY SKKQLFALSP TEVGSLISLG PAESCEFFHD PSMKSSHEGQ VKKSLSVTPL 240
GNDSGYFLNI TVLNNLQKTT ERLSLPISKA EFTVMRTALS FALPHILGWD QALTNHQPSP 300
SPASKPRVER PHPDSEWER
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4kop_A | 5e-71 | 134 | 296 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| 4kop_B | 5e-71 | 134 | 296 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| 4kop_C | 5e-71 | 134 | 296 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| 4kop_D | 5e-71 | 134 | 296 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK061569 | 0.0 | AK061569.1 Oryza sativa Japonica Group cDNA clone:006-311-F08, full insert sequence. |
| GenBank | AK099479 | 0.0 | AK099479.1 Oryza sativa Japonica Group cDNA clone:J013025B22, full insert sequence. |
| GenBank | AK104768 | 0.0 | AK104768.1 Oryza sativa Japonica Group cDNA clone:001-039-A03, full insert sequence. |
| GenBank | CT828510 | 0.0 | CT828510.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129J03, full insert sequence. |
