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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OBART02G02250.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
bZIP |
| Protein Properties |
Length: 335aa MW: 35895 Da PI: 5.2405 |
| Description |
bZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OBART02G02250.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | bZIP_1 | 34.9 | 3.3e-11 | 217 | 247 | 1 | 31 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeL 31
e+elk+++rkq+NRe+ArrsR+RK+ ++ L
OBART02G02250.1 217 ERELKKQKRKQSNRESARRSRLRKQNIMDSL 247
89***********************999887 PP
|
| 2 | bZIP_1 | 30.8 | 6.4e-10 | 255 | 294 | 24 | 63 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 24 KkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
++ae+eeL ++++L aeN++L+ ele++kke+++l s++
OBART02G02250.1 255 FQAECEELSVRADNLRAENSSLRAELERIKKEYEALLSHN 294
59**********************************9987 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 335 aa
Download sequence Send
to blast |
MGTNDPGTPP KATKASEPEQ SPATTSGTTA PVYPEWPGFQ AYSAIPPHGF FPPPVAASPQ 60
AHPYMWGAQG VHPFNHYPML ANGNVEAAGT APGASEINGK NELGRTSGPS ANGITSHSES 120
GSESESEGSD ANSQNDSHSK ENDVKEDGSS QNGISHTALN QNMSMAPTQT GVVIGGVAPT 180
TNLNIGMDYW GAAGSSPVPA MHGKASSGSV RGEQWDEREL KKQKRKQSNR ESARRSRLRK 240
QNIMDSLIEA PKYLFQAECE ELSVRADNLR AENSSLRAEL ERIKKEYEAL LSHNASLKEK 300
LEGNSDSIPY MNEQNDTNGT HQKQQDSDAQ PNDAP
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| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 233 | 239 | RRSRLRK |
| 2 | 233 | 240 | RRSRLRKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK111901 | 0.0 | AK111901.1 Oryza sativa Japonica Group cDNA clone:J023076M20, full insert sequence. |
| GenBank | AK112009 | 0.0 | AK112009.1 Oryza sativa Japonica Group cDNA clone:006-209-B12, full insert sequence. |
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT1G32150.1 | 2e-54 | basic region/leucine zipper transcription factor 68 |
| Publications
? help Back to Top |
- Tabata T,Nakayama T,Mikami K,Iwabuchi M
HBP-1a and HBP-1b: leucine zipper-type transcription factors of wheat.
EMBO J., 1991. 10(6): p. 1459-67
[PMID:2026143] - Tabata T, et al.
A protein that binds to a cis-acting element of wheat histone genes has a leucine zipper motif.
Science, 1989. 245(4921): p. 965-7
[PMID:2772648] - Mikami K, et al.
Developmental and tissue-specific regulation of the gene for the wheat basic/leucine zipper protein HBP-1a(17) in transgenic Arabidopsis plants.
Mol. Gen. Genet., 1995. 248(5): p. 573-82
[PMID:7476857] - Nakayama T,Okanami M,Meshi T,Iwabuchi M
Dissection of the wheat transcription factor HBP-1a(17) reveals a modular structure for the activation domain.
Mol. Gen. Genet., 1997. 253(5): p. 553-61
[PMID:9065688] - Okanami M,Meshi T,Tamai H,Iwabuchi M
HALF-1, a bZIP-type protein, interacting with the wheat transcription factor HBP-1a contains a novel transcriptional activation domain.
Genes Cells, 1996. 1(1): p. 87-99
[PMID:9078369]
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