PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G01180.2
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 866aa    MW: 97853.1 Da    PI: 7.7877
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G01180.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-05557579123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ Cg sF  + +Lk+H+++H
  OBART02G01180.2 557 HTCQECGASFQKPAHLKQHMQSH 579
                      79*******************99 PP
2zf-C2H220.61.2e-06585609123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      + Cp  dC+ s+ rk++L+rH+ +H
  OBART02G01180.2 585 FICPleDCPFSYIRKDHLNRHMLKH 609
                      78*********************99 PP
3zf-C2H214.20.00013614639123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      ++C+   Cg+ Fs k n++rH +  H
  OBART02G01180.2 614 FTCSmdGCGRKFSIKANMQRHVKEiH 639
                      89********************9988 PP
4zf-C2H214.40.00011651675123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      ++C+   C+k+F+  s +k+H  +H
  OBART02G01180.2 651 FVCKeeGCNKVFKYASKMKKHEESH 675
                      89*******************9988 PP
5zf-C2H216.52.4e-05742766223
                      EET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                      kC+   C  sFs+ksnL++Hi+  H
  OBART02G01180.2 742 KCSfeGCECSFSNKSNLTKHIKAsH 766
                      688889***************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513758.70366100IPR002885Pentatricopeptide repeat
PfamPF015351.36892IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.104.7E-872100IPR011990Tetratricopeptide-like helical domain
Gene3DG3DSA:1.25.40.104.7E-8135182IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513759.701136170IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.0E-4138166IPR002885Pentatricopeptide repeat
PfamPF015351.1E-4138165IPR002885Pentatricopeptide repeat
PfamPF015350.084169196IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.063198232IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.5E-4200233IPR002885Pentatricopeptide repeat
PfamPF015358.0E-5200229IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.903268298IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.104.7E-8271330IPR011990Tetratricopeptide-like helical domain
PfamPF015350.029273297IPR002885Pentatricopeptide repeat
PfamPF130411.3E-10298346IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.641299333IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.6E-6301334IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.219334364IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007569.8E-4336363IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.774370400IPR002885Pentatricopeptide repeat
PfamPF015350.042373397IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.104.7E-8400465IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513755.579402432IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.881436470IPR002885Pentatricopeptide repeat
PfamPF015350.56445467IPR002885Pentatricopeptide repeat
SMARTSM0035524511533IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-5554576IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.547557584IPR007087Zinc finger, C2H2
SMARTSM003550.0017557579IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280559579IPR007087Zinc finger, C2H2
SuperFamilySSF576677.05E-11569611No hitNo description
Gene3DG3DSA:3.30.160.601.5E-11577611IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.5E-4585609IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808585614IPR007087Zinc finger, C2H2
PROSITE patternPS000280587609IPR007087Zinc finger, C2H2
SuperFamilySSF576674.63E-8595643No hitNo description
Gene3DG3DSA:3.30.160.602.9E-7612641IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003553.9E-4614639IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.154614644IPR007087Zinc finger, C2H2
PROSITE patternPS000280616639IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.8E-7648675IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.764651675IPR007087Zinc finger, C2H2
SMARTSM003550.0038651675IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280653675IPR007087Zinc finger, C2H2
SMARTSM003555.7683708IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280685708IPR007087Zinc finger, C2H2
SMARTSM0035515711732IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.0E-5723763IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.09E-7724778No hitNo description
PROSITE profilePS5015711.365741771IPR007087Zinc finger, C2H2
SMARTSM003550.002741766IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280743766IPR007087Zinc finger, C2H2
SMARTSM003555.8772798IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280774798IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 866 aa     Download sequence    Send to blast
MNRSVCHHLL TQCKTIRELQ RIHAQALTHG LHPNQQSISC KIFRSYAEFG RPADTGRLFD  60
EIPHPDIISF TSLMSLHLKL DHHRKAISVF SHAIASGHRP DGFAAVGALS ASGGLGDQRI  120
GSAVHGLIFR CGLDSELVVC NALVDMYCRC GKFEPARTVF DRMLVKDEVT WGSMLYGYMK  180
CVGVDSALSF FYQMPMKSTV SWTALITGHV QDKQPIQALE LFGKMLLEGH RPTHITIVGV  240
LSACADIGAL DLGRAIHGYG SKSNATTNII VTNALMDMYA KSGSIASAFS VFEEVQMKDA  300
FTWTTMISSF TVQGNGRKAV ELFWDMLRSG ILPNSVTFVS VLSACSHAGL IQEGRELFDK  360
MREVYHIDPR LEHYGCMVDL LGRGGLLEEA EALIDHMDVE PDIVIWRSLL SACLAHGNDR  420
LAEIAGKEII KREPGDDGVY VLLWNMYASS NRWKEALDMR KQMLSRKIYK KPGCSWIEVD  480
GVVHEFLMCS GDDIDGDTRV EATEHRDIRR YKCEFCTVVR SKKCLIRAHM VAHHKEELDK  540
SEIYKSNGEK VVHEGDHTCQ ECGASFQKPA HLKQHMQSHS DERSFICPLE DCPFSYIRKD  600
HLNRHMLKHQ GKLFTCSMDG CGRKFSIKAN MQRHVKEIHE DETATKSNRQ FVCKEEGCNK  660
VFKYASKMKK HEESHVKLDY VEVVCCEPGC MKTFTNVECL RAHNQACHQY VQCDICGEKH  720
LKKNIKRHLR AHEEVPSTER IKCSFEGCEC SFSNKSNLTK HIKASHDQVK PFACRFTGCE  780
KVFPYKHVRD NHEKSSAHVY TQANFTEMDE QLLSCPRGGR KRKAVTVETL TRKRVTMHGD  840
ASSLDNGTEY LRWLLSGGDD DSSQTH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D5e-572046810333PLS9-PPR
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878917.10.0pentatricopeptide repeat-containing protein At2g22410, mitochondrial
TrEMBLA0A0D3EZT20.0A0A0D3EZT2_9ORYZ; Uncharacterized protein
STRINGOBART02G01180.20.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-102transcription factor IIIA