PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G43110.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 460aa    MW: 48775.7 Da    PI: 8.1456
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G43110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.94.2e-0681103123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cgk F r  nL+ H r H
  OBART01G43110.1  81 FVCEICGKGFQRDQNLQLHRRGH 103
                      89*******************88 PP

2zf-C2H210.70.0016157179123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC  Cgk++  +s+ k H +++
  OBART01G43110.1 157 WKCDRCGKRYAVHSDWKAHSKVC 179
                      58*****************9877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.12E-780103No hitNo description
Gene3DG3DSA:3.30.160.601.3E-581103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01281103IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.61481103IPR007087Zinc finger, C2H2
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
SMARTSM00355240122152IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.0E-4145178IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.12E-7152177No hitNo description
SMARTSM00355160157177IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MEEFELQQQP YYSKLLLGSP LEIANVDDSD LQLVAGVPSD PPPAPPTAVK KKKKRSLPGT  60
PDPSAEVVAL SPRTLLATNR FVCEICGKGF QRDQNLQLHR RGHNLPWKLR QRSGKEPRKR  120
VYVCPEASCV HHSPSRALGD LTGIKKHFCR KHGEKKWKCD RCGKRYAVHS DWKAHSKVCG  180
TREYKRDSFV THRAFCDALA QENNKLAQPM NMAAVTSALQ GQQQAHHPVA DDDDAAGVKS  240
PHLKMFPDVD NIVAAATAGN PLLPPPLSMA GCMLSSLAAP LSSPFLPGCK LGVDAARDAA  300
MVFPPPPAPA GSAAAIMSAT ALLQKAAELG ATTSTGCYGG VAFPAMGIAG GLDRLPSIGH  360
HLAPYDDVVV PAALQGQTAT QLVGFDLGGL LPGQLYGGGG GAMTRAIGSL MHGGDQHAGV  420
VDRRRGEGVR VVDYMGVDDD DDHGCFDGVG PFGPHIGPWA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-23153211370Zinc finger protein JACKDAW
5b3h_F3e-23153211370Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0703900.0AK070390.1 Oryza sativa Japonica Group cDNA clone:J023050E05, full insert sequence.
GenBankAP0032460.0AP003246.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0423A12.
GenBankAP0032660.0AP003266.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0492G09.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635962.10.0protein indeterminate-domain 12
SwissprotQ9SCQ69e-98IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A0D3EYD20.0A0A0D3EYD2_9ORYZ; Uncharacterized protein
STRINGOBART01G43110.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125542534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.19e-95indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]