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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OBART01G43110.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
C2H2 |
Protein Properties |
Length: 460aa MW: 48775.7 Da PI: 8.1456 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OBART01G43110.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 18.9 | 4.2e-06 | 81 | 103 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++Cgk F r nL+ H r H
OBART01G43110.1 81 FVCEICGKGFQRDQNLQLHRRGH 103
89*******************88 PP
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2 | zf-C2H2 | 10.7 | 0.0016 | 157 | 179 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+kC Cgk++ +s+ k H +++
OBART01G43110.1 157 WKCDRCGKRYAVHSDWKAHSKVC 179
58*****************9877 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 460 aa
Download sequence Send
to blast |
MEEFELQQQP YYSKLLLGSP LEIANVDDSD LQLVAGVPSD PPPAPPTAVK KKKKRSLPGT 60 PDPSAEVVAL SPRTLLATNR FVCEICGKGF QRDQNLQLHR RGHNLPWKLR QRSGKEPRKR 120 VYVCPEASCV HHSPSRALGD LTGIKKHFCR KHGEKKWKCD RCGKRYAVHS DWKAHSKVCG 180 TREYKRDSFV THRAFCDALA QENNKLAQPM NMAAVTSALQ GQQQAHHPVA DDDDAAGVKS 240 PHLKMFPDVD NIVAAATAGN PLLPPPLSMA GCMLSSLAAP LSSPFLPGCK LGVDAARDAA 300 MVFPPPPAPA GSAAAIMSAT ALLQKAAELG ATTSTGCYGG VAFPAMGIAG GLDRLPSIGH 360 HLAPYDDVVV PAALQGQTAT QLVGFDLGGL LPGQLYGGGG GAMTRAIGSL MHGGDQHAGV 420 VDRRRGEGVR VVDYMGVDDD DDHGCFDGVG PFGPHIGPWA
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK070390 | 0.0 | AK070390.1 Oryza sativa Japonica Group cDNA clone:J023050E05, full insert sequence. |
GenBank | AP003246 | 0.0 | AP003246.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0423A12. |
GenBank | AP003266 | 0.0 | AP003266.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0492G09. |
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |