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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OBART01G42530.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
Trihelix |
Protein Properties |
Length: 284aa MW: 29959.7 Da PI: 11.0175 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OBART01G42530.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 75.4 | 9.2e-24 | 23 | 94 | 1 | 71 |
trihelix 1 rWtkqevlaLiearremeerlrrgklk.kplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71
rWt++e+l+L++arr me+r rr+ + +W++vs+++r++g+er+p qC+++w nl+++ kki ++ek+
OBART01G42530.1 23 RWTRHETLVLLQARRAMEHRGRRSPQPvRLKWAAVSAYCRRHGVERGPMQCRKRWGNLSWDLKKIVAWEKNL 94
8**********************97764889**************************************985 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
GO:0050777 | Biological Process | negative regulation of immune response |
GO:0071219 | Biological Process | cellular response to molecule of bacterial origin |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 284 aa
Download sequence Send
to blast |
MSGAANATSP AAGAGTPRSR LPRWTRHETL VLLQARRAME HRGRRSPQPV RLKWAAVSAY 60 CRRHGVERGP MQCRKRWGNL SWDLKKIVAW EKNLAAVGRR RRRRGSSRSG TCAASSGARG 120 SCRRRSTGRV YDALVGGHGA APPSDFGEDL ADGDGVDADE LPPPPLMVMP ISATVSAKRG 180 GAASDKNSTS QHDGGGGGGG LKDSEATYGA GVGGEEGTTT ATATATTTSI GRQVIEALER 240 GNRMLGDQLE AQRAAWDAER EQRVALLAAV DKLAGAVCRI ADKL
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP003262 | 0.0 | AP003262.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0482D04. |
GenBank | AP004332 | 0.0 | AP004332.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0093F16. |
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |