PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART01G42150.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

SBP

Protein Properties

Length: 319aa MW: 34057.9 Da PI: 9.0654

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART01G42150.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	123.3	1e-38	5	78	6	78
T-----TT-.-HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 6 gCeadlsea.keyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 gC+adls++ ++yhrrhkvCe+hsk++vv+v+g++qrfCqqCsrfh l efDeekrsCr+rL++hn+rrrk+q+ OBART01G42150.1 5 GCAADLSKCvRDYHRRHKVCEAHSKTAVVTVAGQQQRFCQQCSRFHLLGEFDEEKRSCRKRLDGHNKRRRKPQP 78 8****9879**********************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	29.171	1	76	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.22E-34	5	81	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.6E-27	5	75	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	1.3E-28	5	63	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MGSAGCAADL SKCVRDYHRR HKVCEAHSKT AVVTVAGQQQ RFCQQCSRFH LLGEFDEEKR 60 SCRKRLDGHN KRRRKPQPDP LNPGNLFANH HGAARFTSYP QIFSTAASMS PQETKWPANV 120 VKTEAADVFQ EPYYHALHLN GAAAAAAASI FHHGGNKARK HHFPFLTADH GGGAAAASPL 180 FGCQPFTITP SSESRSSSSS RHSNGKMFAH DGGLDNCALS LLSDNPTPTA QITIPQPLVA 240 GGGQYGGGGD VSLTGLSYVR MAGKDTSILA KSATTTATTA TTPTTTSAQL QYHGYYHHHV 300 SADQGSSDAA IQALPFSSW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-24	6	75	16	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	58	75	KRSCRKRLDGHNKRRRKP

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK062581	0.0	AK062581.1 Oryza sativa Japonica Group cDNA clone:001-100-B10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015611358.1	0.0	squamosa promoter-binding-like protein 2
Swissprot	Q0JGI1	0.0	SPL2_ORYSJ; Squamosa promoter-binding-like protein 2
TrEMBL	A0A0D3EY00	0.0	A0A0D3EY00_9ORYZ; Uncharacterized protein
STRING	OBART01G42150.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10456	30	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	1e-28	SBP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]