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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART01G41230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 254aa MW: 27797.1 Da PI: 4.2388 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.7 | 9.2e-05 | 227 | 250 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+ C+k+F++++ L+ H + H OBART01G41230.1 227 YACKPCNKTFNTSMGLEAHSKAkH 250 78999**************88777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 12.196 | 227 | 254 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 229 | 250 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
METTMGFWGV AVRPGETVMC DPPGEFYYHI SQIALEPGEL NENVQVFVEV DGKRILLGTL 60 SVEHRDESDE EVPLAIPLFP NSDDDKIKEV QNSPSKFATL KSAAAASPTP EAIVEERNNY 120 GKSEADDDDS DEESDASGED EYDDDEDMID KQDSSDDDGD SSDEEETPSK NTKGTNRHVE 180 TPLNTPPQKR ARLATPIMDS KAGTGKRSGY AKKRTANNDM SEHSAGYACK PCNKTFNTSM 240 GLEAHSKAKH TATK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241121 | 1e-174 | AK241121.1 Oryza sativa Japonica Group cDNA, clone: J065094J12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015694821.1 | 7e-95 | PREDICTED: histone deacetylase HDT2-like | ||||
TrEMBL | A0A0D3EXN2 | 0.0 | A0A0D3EXN2_9ORYZ; Uncharacterized protein | ||||
STRING | OBART01G41230.2 | 1e-150 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03740.1 | 5e-09 | histone deacetylase 2C |