 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OBART01G40940.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
ARR-B |
| Protein Properties |
Length: 582aa MW: 64813.5 Da PI: 4.8449 |
| Description |
ARR-B family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OBART01G40940.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | G2-like | 81.7 | 8.4e-26 | 192 | 245 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
k+r++W+ +LH++Fv+av+q+ G +k Pk+il+lm+v+gLt+e+v+SHLQkYRl
OBART01G40940.1 192 KARVVWSVDLHQKFVNAVNQI-GFDKVGPKKILDLMNVPGLTRENVASHLQKYRL 245
68*******************.9*******************************8 PP
|
| 2 | Response_reg | 80.5 | 5.4e-27 | 12 | 120 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92
vl+vdD+p+ +++l+++l+k y ev+++ ++ al++l+e++ +D+++ D++mp+mdG++ll++i e +lp+i+++ ge + + + ++
OBART01G40940.1 12 VLVVDDDPTWLKILEKMLRKCSY-EVTTCGLARVALDILRERKnkFDIVISDVNMPDMDGFKLLEHIGLEM-DLPVIMMSIDGETSRVMKGVQH 103
89*********************.***************877777**********************6654.8********************* PP
TESEEEESS--HHHHHH CS
Response_reg 93 GakdflsKpfdpeelvk 109
Ga d+l Kp+ ++el++
OBART01G40940.1 104 GACDYLLKPVRMKELRN 120
**************987 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0000160 | Biological Process | phosphorelay signal transduction system |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009735 | Biological Process | response to cytokinin |
| GO:0010082 | Biological Process | regulation of root meristem growth |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 582 aa
Download sequence Send
to blast |
MDATAFPYGL RVLVVDDDPT WLKILEKMLR KCSYEVTTCG LARVALDILR ERKNKFDIVI 60
SDVNMPDMDG FKLLEHIGLE MDLPVIMMSI DGETSRVMKG VQHGACDYLL KPVRMKELRN 120
IWQHVYRKKM HEVKEIEGND SCDDLQILRN SFEGLDEKSL FMRSDSDTMR KRKDVDKDHA 180
DQESSDGNTV KKARVVWSVD LHQKFVNAVN QIGFDKVGPK KILDLMNVPG LTRENVASHL 240
QKYRLYLSRL QKQNEERILG AARQDFSHKG TSENLNLRSS FQEQPSNIAN GYPHASQNIQ 300
TQANMLDSQL EDTKSTVPLP VPDKKRTLAS DAADSQNVTS ASSLGGVLSF KSMPVNQDRK 360
PSETMILECQ AWTGGIPSKQ FMQYPKHNHE RCDLLGDYSC LPKPDLEHPV GPSNLYAPPP 420
LISMSCGMEG DARDFSDVKP AIMDCIKSLS PALTCTVDSV SVQLSDSVVT SIDGDLKSSG 480
VDGLPSIKDC CLDQTNSQGS LRPSQEPSII GSTELASLPE DLPSYPLHGV SLENIGLSSI 540
DLLNYSDAMI LSGLQSNWYD DLEFSSEMMD YPSIDECLFA SS
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK062250 | 0.0 | AK062250.1 Oryza sativa Japonica Group cDNA clone:001-047-G01, full insert sequence. |
