PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G40830.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 511aa    MW: 55841.6 Da    PI: 6.6899
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G40830.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS344.61.7e-1051465101374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      lv+lL++cAeav+ +d ++a alL +l+  a  +g+++qR+a++f+++La rla      ++  +  ++s    +    al l +e++P+l+f+
  OBART01G40830.1 146 LVQLLVACAEAVACRDRAQAAALLRELQAGAPVHGTAFQRVASCFVQGLADRLAL-----AHPPALGPASMAFCIPPSYALALAYELCPYLRFA 234
                      689***************************************************8.....333333333333377788888899********** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                      h++aN  +lea+ege+ vH++D++++     G QW  Ll+ La+R++g+p ++R+Tgvg+    + ++++++g+ L+ +Ae lg+ +ef+  + 
  OBART01G40830.1 235 HFVANACMLEAFEGESNVHVVDLGMTlgldRGHQWRGLLDGLAARASGKPaRVRVTGVGA----RMDTIRAIGRELEAYAEGLGMYLEFRG-IN 323
                      **********************98762222567*************77666*********....9**************************.79 PP

             GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                      + le+l++++L v+ +Ea+a+n+vl+lh++++es    +   +vL+++++lsP+ + +veq+a hn++ Fl rf+eal+yy+alfd+l+a lpr
  OBART01G40830.1 324 RGLESLHIDDLGVDADEAVAINSVLELHSVVKESRGALN---SVLQTIRKLSPRAFLLVEQDAGHNGPFFLGRFMEALHYYAALFDALDAALPR 414
                      9******************************88877777...8*************************************************** PP

             GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsv 370
                       +  r+ vE++ +g ei+nvv cega+r+erhe++ +Wr+r+++aGF++vp++    ++a+  l + + + gy+v ee+g+lvlgWk++p++++
  OBART01G40830.1 415 YDARRARVEQFHFGAEIRNVVGCEGAARVERHERADQWRRRMSRAGFQSVPIKMA--AKAREWLDENAgGGGYTVAEEKGCLVLGWKGKPVIAA 506
                      ****************************************************754..467777777776999********************** PP

             GRAS 371 SaWr 374
                      S+W+
  OBART01G40830.1 507 SCWK 510
                      ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.239120491IPR005202Transcription factor GRAS
PfamPF035145.8E-103146510IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MGMSPEPCNS ISDCSQQQSH HLTLTQQQDS TIICTNQELD YYYRFYDVDE AAFDGNEVEL  60
VSRFSKVTRM DRMISSPYQP TWSPAQAAVD VVGSSETSRV RKKRFWDVLE SCKQKVEAME  120
AMDTPATATF RVGAGGGGGG ADGMRLVQLL VACAEAVACR DRAQAAALLR ELQAGAPVHG  180
TAFQRVASCF VQGLADRLAL AHPPALGPAS MAFCIPPSYA LALAYELCPY LRFAHFVANA  240
CMLEAFEGES NVHVVDLGMT LGLDRGHQWR GLLDGLAARA SGKPARVRVT GVGARMDTIR  300
AIGRELEAYA EGLGMYLEFR GINRGLESLH IDDLGVDADE AVAINSVLEL HSVVKESRGA  360
LNSVLQTIRK LSPRAFLLVE QDAGHNGPFF LGRFMEALHY YAALFDALDA ALPRYDARRA  420
RVEQFHFGAE IRNVVGCEGA ARVERHERAD QWRRRMSRAG FQSVPIKMAA KAREWLDENA  480
GGGGYTVAEE KGCLVLGWKG KPVIAASCWK C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-5715350925377Protein SCARECROW
5b3h_D1e-5715350925377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037910.0AP003791.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1065G12.
GenBankAP0067570.0AP006757.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0551C06.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646199.10.0DELLA protein RGL1
TrEMBLA0A0D3EXI50.0A0A0D3EXI5_9ORYZ; Uncharacterized protein
STRINGOBART01G40830.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56403354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-60RGA-like 1