PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G40650.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 690aa    MW: 71197.6 Da    PI: 7.0671
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G40650.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.11.6e-11281337155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  OBART01G40650.1 281 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 337
                      57*******************4444.2455535555.779999**************98 PP
2AP246.77.9e-15380431155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  OBART01G40650.1 380 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 431
                      57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.1E-9281337IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-15281347IPR016177DNA-binding domain
CDDcd000182.94E-17281347No hitNo description
Gene3DG3DSA:3.30.730.105.2E-12282346IPR001471AP2/ERF domain
PROSITE profilePS5103217.385282345IPR001471AP2/ERF domain
SMARTSM003809.2E-23282351IPR001471AP2/ERF domain
PRINTSPR003673.6E-6283294IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-17380441IPR016177DNA-binding domain
CDDcd000187.71E-23380441No hitNo description
PfamPF008479.8E-10380431IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-18381440IPR001471AP2/ERF domain
PROSITE profilePS5103219.045381439IPR001471AP2/ERF domain
SMARTSM003801.5E-33381445IPR001471AP2/ERF domain
PRINTSPR003673.6E-6421441IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MATMNNWLAF SLSPQDQLPP SQANSTLISA AATTTAAGDS SAGDVCFNIP QDWSMRGSEL  60
SALVAEPKLE DFLGGISFSE QHHHGGKGGV IPSSAAACYA SSGSSVGYLY PPPSSSSLQF  120
ADSVMVATSS PVVAHDGVSG GGMVSAAAAA AASGNGGIGL SMIKNWLRSQ PAPQPAQALS  180
LSMNMAGTTT AQGGGAMALL AGAGERGRTT PASESLSTSA HGATTATMAG GRKEINEEGS  240
GSAGAVVAVG SESGGSGAVV EAGAAAAAAR KSVDTFGQRT SIYRGVTRHR WTGRYEAHLW  300
DNSCRREGQT RKGRQGGYDK EEKAARAYDL AALKYWGPTT TTNFPVNNYE KELEEMKHMT  360
RQEFVASLRR KSSGFSRGAS IYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE  420
AYDIAAIKFR GLNAVTNFDM SRYDVKSILD SAALPVGTAA KRLKDAEAAA AYDVGRIASH  480
LGGDGAYAAH YGHHHHSAAA AWPTIAFQAA APPPHAAGLY HPYAQPLRGW CKQEQDHAVI  540
AAAHSLQDLH HLNLGAAAAA HDFFSQAMQQ QHGLGSIDNA SLEHSTGSNS VVYNGDNGGG  600
GGGYIMAPMS AASATATAVA SSHDHGGDGG KQVQMGYDSY LVGADAYGGG GAGRMPSWAM  660
TPASAPAATS SSDMTGVCHG AQLFSVWNDT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2408920.0AK240892.1 Oryza sativa Japonica Group cDNA, clone: J065030K10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634444.10.0AP2-like ethylene-responsive transcription factor PLT1
TrEMBLA0A0D3EXF80.0A0A0D3EXF8_9ORYZ; Uncharacterized protein
STRINGOBART01G40650.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-115AINTEGUMENTA-like 5