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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART01G40650.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | AP2 | ||||||||
Protein Properties | Length: 690aa MW: 71197.6 Da PI: 7.0671 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.1 | 1.6e-11 | 281 | 337 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g OBART01G40650.1 281 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 337 57*******************4444.2455535555.779999**************98 PP | |||||||
2 | AP2 | 46.7 | 7.9e-15 | 380 | 431 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g OBART01G40650.1 380 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 431 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.1E-9 | 281 | 337 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-15 | 281 | 347 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.94E-17 | 281 | 347 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.2E-12 | 282 | 346 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.385 | 282 | 345 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.2E-23 | 282 | 351 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-6 | 283 | 294 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-17 | 380 | 441 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.71E-23 | 380 | 441 | No hit | No description |
Pfam | PF00847 | 9.8E-10 | 380 | 431 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.0E-18 | 381 | 440 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.045 | 381 | 439 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-33 | 381 | 445 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-6 | 421 | 441 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 690 aa Download sequence Send to blast |
MATMNNWLAF SLSPQDQLPP SQANSTLISA AATTTAAGDS SAGDVCFNIP QDWSMRGSEL 60 SALVAEPKLE DFLGGISFSE QHHHGGKGGV IPSSAAACYA SSGSSVGYLY PPPSSSSLQF 120 ADSVMVATSS PVVAHDGVSG GGMVSAAAAA AASGNGGIGL SMIKNWLRSQ PAPQPAQALS 180 LSMNMAGTTT AQGGGAMALL AGAGERGRTT PASESLSTSA HGATTATMAG GRKEINEEGS 240 GSAGAVVAVG SESGGSGAVV EAGAAAAAAR KSVDTFGQRT SIYRGVTRHR WTGRYEAHLW 300 DNSCRREGQT RKGRQGGYDK EEKAARAYDL AALKYWGPTT TTNFPVNNYE KELEEMKHMT 360 RQEFVASLRR KSSGFSRGAS IYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE 420 AYDIAAIKFR GLNAVTNFDM SRYDVKSILD SAALPVGTAA KRLKDAEAAA AYDVGRIASH 480 LGGDGAYAAH YGHHHHSAAA AWPTIAFQAA APPPHAAGLY HPYAQPLRGW CKQEQDHAVI 540 AAAHSLQDLH HLNLGAAAAA HDFFSQAMQQ QHGLGSIDNA SLEHSTGSNS VVYNGDNGGG 600 GGGYIMAPMS AASATATAVA SSHDHGGDGG KQVQMGYDSY LVGADAYGGG GAGRMPSWAM 660 TPASAPAATS SSDMTGVCHG AQLFSVWNDT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK240892 | 0.0 | AK240892.1 Oryza sativa Japonica Group cDNA, clone: J065030K10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634444.1 | 0.0 | AP2-like ethylene-responsive transcription factor PLT1 | ||||
TrEMBL | A0A0D3EXF8 | 0.0 | A0A0D3EXF8_9ORYZ; Uncharacterized protein | ||||
STRING | OBART01G40650.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1569 | 37 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 1e-115 | AINTEGUMENTA-like 5 |