PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G39970.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 428aa    MW: 43585 Da    PI: 5.9422
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G39970.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.5e-05124146123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ C+k F ++   + H+r+H
  OBART01G39970.1 124 FPCHVCSKEFGSRKAVHGHMRVH 146
                      89*******************99 PP
2zf-C2H216.72e-05317339123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ Cgk Fs+   L  H+r+H
  OBART01G39970.1 317 HPCKTCGKEFSTGVALGGHMRKH 339
                      78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139120.0013123147IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.676124151IPR007087Zinc finger, C2H2
SMARTSM003550.0089124146IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.9E-9124146No hitNo description
PROSITE patternPS000280126146IPR007087Zinc finger, C2H2
SMARTSM003555264288IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280266288IPR007087Zinc finger, C2H2
SuperFamilySSF576676.9E-9312339No hitNo description
PROSITE profilePS5015711.219317344IPR007087Zinc finger, C2H2
PfamPF139124.1E-10317341IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.600.001317339IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.019317339IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280319339IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MVEDQEKSSS SPPVPPPPEE EEMEEGEIHP GGGGGGGGGY YDSGSETEDD DDRLARRGGG  60
GGGREPGEQA PPPRGHPRGD TGSAPAAFAD AVVAGSEGTI SDDHGDGIAG AAAAADAPVA  120
RVAFPCHVCS KEFGSRKAVH GHMRVHQADK DKEKEPSLHL ALGWTSTGKR GANGNARAVT  180
VAFAPMEQAV GDDDGDARAI VLAPAAQPQP QPMVVAEAAN PPNQVADDNH RLPVPAAAPY  240
VGAAAAPARR RARPKRNAGQ GGPYRCSYPG CKGEYRTHQG LGGHVAGHIN REKQAAAAAQ  300
GGSGGGLGGG ARPEGNHPCK TCGKEFSTGV ALGGHMRKHY DPKKKKKHAG LVLTLSVAPP  360
TPAPAPSIAG AALPPAEVKA DVDEHEAEQV PMAPVSPPAE ARGNIVRIFG VDIEKPADEE  420
EQEGGSDV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881238.10.0zinc finger protein ZAT1-like
TrEMBLA0A0D3EX810.0A0A0D3EX81_9ORYZ; Uncharacterized protein
STRINGOBART01G39970.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139281224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.14e-09C2H2 family protein