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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OBART01G38810.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
C2H2 |
Protein Properties |
Length: 522aa MW: 57067 Da PI: 5.6126 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OBART01G38810.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 19.7 | 2.2e-06 | 283 | 304 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23
C +Cgk F+r nL+ H+r H
OBART01G38810.1 283 FCLICGKGFKRDANLRMHMRGH 304
5*******************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010044 | Biological Process | response to aluminum ion |
GO:0010447 | Biological Process | response to acidic pH |
GO:0005634 | Cellular Component | nucleus |
GO:0003676 | Molecular Function | nucleic acid binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
Protein Sequence Length: 522 aa
Download sequence Send
to blast |
MDSGLGRSSE TSLKALPSMA SNATRNTDPD QQGVRFSSMD QPPCFARPGQ SFPAFPPLFG 60 VQSSSLYVPD DIEAKIGNQF ESNPSPNNPT MDWDPQAMLS NLSFLEQKIK QVKDIVQSMS 120 NRESQVAGGS SEAQAKQQLV TADLTCIIIQ LISTAGSLLP SMKNPISSNP ALRHLSNTLC 180 APMILGTNCN LRPSANDEAT IPDISKTPDY EELMNSLNTT QAESDEMMNC QNPCGGEGSE 240 PIPMEDHDVK ESDDGGEREN LPPGSYVVLQ LEKEEILAPH THFCLICGKG FKRDANLRMH 300 MRGHGDEYKT AAALAKPSKD SSSESAPVTR YSCPYVGCKR NKEHKKFQPL KTILCVKNHY 360 KRSHCDKSYT CSRCNTKKFS VIADLKTHEK HCGRDKWLCS CGTTFSRKDK LFGHVALFQG 420 HTPALPMDDI KVTGASEQPQ GSEAMNTMVG SAGYNFPGSS SDDIPNLDMK MADDPRYFSP 480 LSFDPCFGGL DDFTRPGFDI SENPFSFLPS GSCSFGQQNG DS
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK072211 | 0.0 | AK072211.1 Oryza sativa Japonica Group cDNA clone:J013161E15, full insert sequence. |
GenBank | AK072417 | 0.0 | AK072417.1 Oryza sativa Japonica Group cDNA clone:J023085P15, full insert sequence. |
GenBank | AK100840 | 0.0 | AK100840.1 Oryza sativa Japonica Group cDNA clone:J023123F03, full insert sequence. |
GenBank | AP003235 | 0.0 | AP003235.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0039A07. |
GenBank | AP003566 | 0.0 | AP003566.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBb0008G24. |
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |