PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART01G38190.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 256aa MW: 28275.5 Da PI: 5.1885 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 135.8 | 2.8e-42 | 9 | 142 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvka...eekewyfFskrdkkyatgkrknratksgyWkat 86 +pGfrF Pt+eel+++yL++k++g + ++e+vi+ +d+y+v+P +L + + e + w++F++r++++a+g r++r+t sgyWka OBART01G38190.1 9 APGFRFYPTEEELICFYLRNKLDGLRDDIERVIPVFDVYSVDPLQLSEihhemlG--GggeEGEPWFYFCPRQEREARGGRPSRTTPSGYWKAA 100 59***************************99***************854555431..14335669***************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g+ v+s++++ +g+kkt+vfy+grap+g+kt W m+eyr+ OBART01G38190.1 101 GTPGVVYSADRRPIGMKKTMVFYRGRAPSGTKTAWKMNEYRA 142 ****************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 44.443 | 8 | 181 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.71E-46 | 9 | 180 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.3E-24 | 10 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MADGGGRRAP GFRFYPTEEE LICFYLRNKL DGLRDDIERV IPVFDVYSVD PLQLSEIHHE 60 MLGGGGEEGE PWFYFCPRQE REARGGRPSR TTPSGYWKAA GTPGVVYSAD RRPIGMKKTM 120 VFYRGRAPSG TKTAWKMNEY RAFHYPDASS ASASSAGAAA PPNHLPPQLR SEFSLCRLYT 180 RSGGIRQFDR RPLAGGGDEN PGPSMAAAAA SPEENDGSGS SMQQLELMDQ GGAVDPDWDQ 240 WDDLATLTAL LYWPRD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-27 | 10 | 141 | 19 | 141 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-27 | 10 | 141 | 19 | 141 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-27 | 10 | 141 | 19 | 141 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-27 | 10 | 141 | 19 | 141 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-27 | 10 | 144 | 22 | 147 | NAC domain-containing protein 19 |
3swm_B | 1e-27 | 10 | 144 | 22 | 147 | NAC domain-containing protein 19 |
3swm_C | 1e-27 | 10 | 144 | 22 | 147 | NAC domain-containing protein 19 |
3swm_D | 1e-27 | 10 | 144 | 22 | 147 | NAC domain-containing protein 19 |
3swp_A | 1e-27 | 10 | 144 | 22 | 147 | NAC domain-containing protein 19 |
3swp_B | 1e-27 | 10 | 144 | 22 | 147 | NAC domain-containing protein 19 |
3swp_C | 1e-27 | 10 | 144 | 22 | 147 | NAC domain-containing protein 19 |
3swp_D | 1e-27 | 10 | 144 | 22 | 147 | NAC domain-containing protein 19 |
4dul_A | 1e-27 | 10 | 141 | 19 | 141 | NAC domain-containing protein 19 |
4dul_B | 1e-27 | 10 | 141 | 19 | 141 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK071274 | 0.0 | AK071274.1 Oryza sativa Japonica Group cDNA clone:J023087C18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015632691.1 | 0.0 | NAC domain-containing protein 90 isoform X2 | ||||
Swissprot | Q9FMR3 | 1e-63 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A0D3EWL8 | 0.0 | A0A0D3EWL8_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0N5E4 | 0.0 | A0A0E0N5E4_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2WX86 | 0.0 | A2WX86_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1NTL2 | 0.0 | I1NTL2_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q94CW0 | 0.0 | Q94CW0_ORYSJ; NAC transcription factor-like protein | ||||
STRING | ORUFI01G41540.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS01T0862800-01 | 0.0 | (Oryza sativa) | ||||
STRING | ORGLA01G0320200.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | OBART01G38190.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 9e-62 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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