PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART01G35380.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 244aa MW: 25683.7 Da PI: 7.9716 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 67.6 | 1.8e-21 | 77 | 138 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-S..SST.TEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversa..edp.kvveitYegeHnh 58 Dg+ WrKYGqKe++g ++pr YYrC+++ gC ++++v++s+ +dp +++i Y geH++ OBART01G35380.1 77 TDGFIWRKYGQKEINGCKHPRLYYRCAFRgqGCLATRRVQQSQsqDDPaAAFVIAYYGEHTC 138 6***************************9999********87621455257899******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.9E-22 | 69 | 138 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 16.903 | 71 | 136 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.22E-20 | 72 | 139 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.6E-29 | 76 | 140 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-22 | 78 | 138 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MAMLGSSSAV ILRCCDRVIA KLNRGGATGA TTGKKRKAAE SAAAAAAVTS PSLPVTPTKR 60 RARGAEAVRE VRSGTTTDGF IWRKYGQKEI NGCKHPRLYY RCAFRGQGCL ATRRVQQSQS 120 QDDPAAAFVI AYYGEHTCGG DAAAAAACRD GELMPPAVIN SGASSFAAAW NMASREPVSS 180 LAVERRSCDG DAPSETSQGW SPSFSSEVEL DVVGFDLAGA DSSASPVWEF LNGSFDWESV 240 INSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 3e-14 | 78 | 138 | 10 | 68 | OsWRKY45 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108657 | 0.0 | AK108657.1 Oryza sativa Japonica Group cDNA clone:002-148-E07, full insert sequence. | |||
GenBank | AY870606 | 0.0 | AY870606.1 Oryza sativa (japonica cultivar-group) WRKY21 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015621234.1 | 1e-159 | probable WRKY transcription factor 30 | ||||
TrEMBL | A0A0D3EVL6 | 1e-177 | A0A0D3EVL6_9ORYZ; Uncharacterized protein | ||||
STRING | OBART01G35380.1 | 1e-178 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8322 | 31 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46400.1 | 1e-15 | WRKY DNA-binding protein 46 |