PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

OBART01G34150.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 163aa MW: 18257.8 Da PI: 7.4573

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART01G34150.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.2	5.5e-11	9	58	1	50
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 e+el+++r+ NReA r++R++Kka + Lee+vk+L + N++L +l+ OBART01G34150.1 9 EEELRKTRKPLGNREAVRKYREKKKAHAAFLEEEVKKLRTTNQQLLRRLQ 58 789******************************************98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.8E-12	9	76	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	8.8E-15	9	77	No hit	No description
PROSITE profile	PS50217	8.979	11	58	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	3.7E-12	11	58	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.23E-9	12	59	No hit	No description
CDD	cd14686	4.28E-10	14	67	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MASGENNVEE ELRKTRKPLG NREAVRKYRE KKKAHAAFLE EEVKKLRTTN QQLLRRLQGH 60 ISLEAEVVRL RALLFDIRGK IDAEIGTFPF QKQCSFGSVT CTDHSPCFNT STEVAVREES 120 SRPTIVDCGI DGTGIISHEL DIPKMVNSVD VIPSFVNSAS LTE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003221	0.0	AP003221.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0003D09.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015618027.1	1e-116	basic leucine zipper 23
Refseq	XP_015618034.1	1e-116	basic leucine zipper 23
TrEMBL	A0A0D3EV53	1e-116	A0A0D3EV53_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0N3R4	1e-116	A0A0E0N3R4_ORYRU; Uncharacterized protein
TrEMBL	A2ZYR0	1e-116	A2ZYR0_ORYSJ; Uncharacterized protein
TrEMBL	I1NSG7	1e-116	I1NSG7_ORYGL; Uncharacterized protein
STRING	ORUFI01G37470.1	1e-117	(Oryza rufipogon)
STRING	ORGLA01G0280700.1	1e-117	(Oryza glaberrima)
STRING	OBART01G34150.1	1e-117	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3831	36	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16770.1	5e-26	bZIP family protein