PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G33360.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 391aa    MW: 41345.1 Da    PI: 6.9044
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G33360.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.11e-052813181254
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  OBART01G33360.1 281 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 318
                      677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.731269318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-11279333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.38E-6279323No hitNo description
SMARTSM003530.0035280324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-9283326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MANEWWSASQ RSHGTSACSA APSPLTADRV SCGWTSPAAA AAESTSSITF QDPSRSSAAH  60
HQPLSDAASS LGDPHMVDWT QAFLSGRSDA SFQAVLQDDM AASTRPFRAQ PTAADEAVMT  120
NPFRDMGVGQ GLLLDQASAP LHGLSFDAGE PAVAPATHSI TTSFGDYQHS ASYDAAAAVM  180
QFSQTPRAPS LPAAAQMQFL SGSYQLPFGG APPLPSQLLL QAMQPKPSCS SNANTLLAKS  240
NSGSAQQICS SAGRKSVSDS PAAAKRPRIE APSPLPTFKV RKEKLGDRIT ALQQLVSPFG  300
KTDTASVLHE AIEYIKFLHE QVASLSSPYL KNGNPLQHFQ QKGSESTKDA EQPKPDLRSR  360
GLCLVPVAST YTVASETVPE FWHPTFGGTF R
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633446.10.0transcription factor bHLH123
TrEMBLA0A0D3EUV40.0A0A0D3EUV4_9ORYZ; Uncharacterized protein
STRINGOBART01G33360.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29703464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.18e-52bHLH family protein